README.md
setup.cfg
setup.py
SNDG/__init__.py
SNDG/ann.py
SNDG/Annotation/CMScan.py
SNDG/Annotation/EMapper.py
SNDG/Annotation/GFFUtils.py
SNDG/Annotation/GenebankUtils.py
SNDG/Annotation/InterPro.py
SNDG/Annotation/Prokka.py
SNDG/Annotation/__init__.py
SNDG/BioMongo/__init__.py
SNDG/BioMongo/Model/Alignment.py
SNDG/BioMongo/Model/DruggabilitySearch.py
SNDG/BioMongo/Model/Feature.py
SNDG/BioMongo/Model/Ontology.py
SNDG/BioMongo/Model/Pathway.py
SNDG/BioMongo/Model/Protein.py
SNDG/BioMongo/Model/ResidueAln.py
SNDG/BioMongo/Model/SeqColDruggabilityParam.py
SNDG/BioMongo/Model/SeqColOntologyIndex.py
SNDG/BioMongo/Model/SeqCollection.py
SNDG/BioMongo/Model/Sequence.py
SNDG/BioMongo/Model/Structure.py
SNDG/BioMongo/Model/Taxonomy.py
SNDG/BioMongo/Model/Variant.py
SNDG/BioMongo/Model/__init__.py
SNDG/BioMongo/Model/exceptions.py
SNDG/BioMongo/Model/variant.py
SNDG/BioMongo/Process/BioCyc2Mongo.py
SNDG/BioMongo/Process/BioDocFactory.py
SNDG/BioMongo/Process/BioMongoDB.py
SNDG/BioMongo/Process/COG2Mongo.py
SNDG/BioMongo/Process/EC2Mongo.py
SNDG/BioMongo/Process/EMapper2Mongo.py
SNDG/BioMongo/Process/GO2Mongo.py
SNDG/BioMongo/Process/Importer.py
SNDG/BioMongo/Process/Index.py
SNDG/BioMongo/Process/KeywordIndexer.py
SNDG/BioMongo/Process/PFAM2Mongo.py
SNDG/BioMongo/Process/PathwaysAnnotator.py
SNDG/BioMongo/Process/SearchLoader.py
SNDG/BioMongo/Process/SeqCollectionLoader.py
SNDG/BioMongo/Process/StructureAnotator.py
SNDG/BioMongo/Process/StructureIndexer.py
SNDG/BioMongo/Process/Taxon.py
SNDG/BioMongo/Process/Variants.py
SNDG/BioMongo/Process/__init__.py
SNDG/Comparative/CoverageAnalysis.py
SNDG/Comparative/MSAMap.py
SNDG/Comparative/Mapping.py
SNDG/Comparative/Mauve.py
SNDG/Comparative/MultiRefCoreAln.py
SNDG/Comparative/Pangenome.py
SNDG/Comparative/Puzzle.py
SNDG/Comparative/ResistanceAnalysis.py
SNDG/Comparative/Saureus.py
SNDG/Comparative/TBDream.py
SNDG/Comparative/Tree.py
SNDG/Comparative/VariantCalling.py
SNDG/Comparative/VariantSet.py
SNDG/Comparative/VcfSnpeffIO.py
SNDG/Comparative/__init__.py
SNDG/Graphics/CustomBiopythonTranslator.py
SNDG/Graphics/SeqPrinter.py
SNDG/Graphics/__init__.py
SNDG/Network/KEGG.py
SNDG/Network/PathwayTools.py
SNDG/Network/Reactome.py
SNDG/Network/SBMLProcessor.py
SNDG/Network/__init__.py
SNDG/Pipeline/Analysis.py
SNDG/Pipeline/__init__.py
SNDG/Sequence/Assembly.py
SNDG/Sequence/AssemblyFixer.py
SNDG/Sequence/BBH.py
SNDG/Sequence/CDHit.py
SNDG/Sequence/FastQ.py
SNDG/Sequence/Hmmer.py
SNDG/Sequence/PSIBlast.py
SNDG/Sequence/Primers.py
SNDG/Sequence/Primers_old.py
SNDG/Sequence/ProteinAnnotator.py
SNDG/Sequence/__init__.py
SNDG/Sequence/pfam.py
SNDG/Sequence/so.py
SNDG/Structure/ChainSplitter.py
SNDG/Structure/CompoundTypes.py
SNDG/Structure/FPocket.py
SNDG/Structure/MOAD.py
SNDG/Structure/Modeller.py
SNDG/Structure/Modelome.py
SNDG/Structure/PDBdb.py
SNDG/Structure/PDBs.py
SNDG/Structure/PIR2Fasta.py
SNDG/Structure/PsiProfile.py
SNDG/Structure/QMean.py
SNDG/Structure/QuickModelome.py
SNDG/Structure/SecondaryStruct.py
SNDG/Structure/StructureAnnotator.py
SNDG/Structure/StructureVariant.py
SNDG/Structure/__init__.py
SNDG/WebServices/BoldUpdater.py
SNDG/WebServices/Downloader.py
SNDG/WebServices/EBI.py
SNDG/WebServices/EC.py
SNDG/WebServices/NCBI.py
SNDG/WebServices/Offtarget.py
SNDG/WebServices/PDBsWS.py
SNDG/WebServices/Uniprot.py
SNDG/WebServices/UpdateProteome.py
SNDG/WebServices/__init__.py
scripts/JBrowse.py
scripts/SNDGUpdater.py
scripts/__init__.py
scripts/bia_update_model_props.py
scripts/bia_update_pdb_props.py
scripts/build_structure_table.py
scripts/chembl_import.py
scripts/eggnoc.py
scripts/export_reactome.py
scripts/extended_domain.py
scripts/import_ncbi_assembly.py
scripts/load_bia_structurome.py
scripts/load_genome.py
scripts/pocketome.py
scripts/protein_fasta_annotator.py
scripts/refseq2bioslq.py
scripts/render_tree.py
scripts/resist_celfi.py
scripts/sndg_index.py
scripts/structurome.py
scripts/update_genomes_pdb_blast.py
scripts/update_pdb.py
scripts/validate_db_sndg.py
scripts/validate_db_tdr.py
scripts/vcf2aln.py
scripts/pdbdb/01-load_pdb.py
scripts/pdbdb/02-chain-assesments.py
scripts/pdbdb/03-domain-assesments.py
scripts/pdbdb/__init__.py
sndg_bio.egg-info/PKG-INFO
sndg_bio.egg-info/SOURCES.txt
sndg_bio.egg-info/dependency_links.txt
sndg_bio.egg-info/requires.txt
sndg_bio.egg-info/top_level.txt
test/test_VcfSnpeffIO.py
test/test_structureanvariant.py