anndata<0.11.0,>=0.8.0
kaleido
multiprocess
MACS3<3.1,>=3.0
natsort
numpy<2.0.0,>=1.16.0
pandas<2.1.2,>=1.0
plotly>=5.6.0
polars<0.20.0,>=0.18.15
pooch<2.0.0,>=1.6.0
igraph>=0.10.3
pyarrow
pyfaidx<0.8.0,>=0.7.0
rustworkx
scipy<2.0.0,>=1.4
scikit-learn<2.0.0,>=1.0
tqdm>=4.62
typing_extensions

[all]
snapatac2[extra]
snapatac2[recommend]

[extra]
scanorama>=1.7.3
harmonypy>=0.0.9
xgboost>=1.4
umap-learn>=0.5.0

[recommend]
scanpy>=1.9
scvi-tools>=1.0
