anndata<0.10.0,>=0.8.0
kaleido
multiprocess
MACS3==3.0.0b3
natsort
numpy>=1.16.0
pandas>=1.0
plotly>=5.6.0
polars<0.20.0,>=0.18.15
pooch>=1.6.0
igraph>=0.10.3
pynndescent
pyarrow
pyfaidx
rustworkx
scipy>=1.4
scikit-learn>=1.0
tqdm>=4.62
typing_extensions
umap-learn>=0.5.0

[all]
snapatac2[extra]
snapatac2[recommend]

[extra]
scanorama>=1.7.3
harmonypy>=0.0.9
xgboost>=1.4

[recommend]
scanpy>=1.9
scvi-tools>=1.0
