from .embedding import *

from ._leiden import leiden
from ._kmeans import kmeans
from ._dbscan import dbscan
from ._hdbscan import hdbscan
from ._smooth import smooth
from ._call_peaks import call_peaks
from ._diff import marker_regions, diff_test
from ._network import (
    prune_network, init_network_from_annotation, to_gene_network,
    add_cor_scores, add_regr_scores, add_tf_binding,
)
from ._motif import motif_enrichment
from ._integration import transfer_labels
from ._misc import aggregate_X