README.rst
pyproject.toml
snakevir/VERSION
snakevir/__init__.py
snakevir/main.py
snakevir/snakefile
snakevir.egg-info/PKG-INFO
snakevir.egg-info/SOURCES.txt
snakevir.egg-info/dependency_links.txt
snakevir.egg-info/entry_points.txt
snakevir.egg-info/requires.txt
snakevir.egg-info/top_level.txt
snakevir/function/edit_cluster.py
snakevir/function/install.py
snakevir/function/make_config.py
snakevir/function/run.py
snakevir/install_files/cluster.yaml
snakevir/install_files/config.yaml
snakevir/install_files/silva_db.tar.gz
snakevir/install_files/snakevir_environment.yml
snakevir/install_files/snakevir_module
snakevir/script/build_count_table.py
snakevir/script/build_tables_coverage.py
snakevir/script/clustering_Report.Rmd
snakevir/script/complet_taxo_dic_v3.py
snakevir/script/correc_taxo.pickle
snakevir/script/count_range_cov.py
snakevir/script/create_results_doc.py
snakevir/script/create_results_doc_SE.py
snakevir/script/create_results_doc_new.py
snakevir/script/custom_taxo.pickle
snakevir/script/extract_blast_hits.py
snakevir/script/fastqCombinePairedEnd.py
snakevir/script/get_host.py
snakevir/script/get_rank.py
snakevir/script/merge_cov.py
snakevir/script/modify_pickle.py
snakevir/script/multihit.py
snakevir/script/stats_coverage.py
snakevir/script/test.csv
snakevir/script/virushostdb1_21.csv
snakevir/snakefiles/assembly.snake
snakevir/snakefiles/blast_taxid.snake
snakevir/snakefiles/depth.snake
snakevir/snakefiles/map_on_assembly.snake
snakevir/snakefiles/read_processing.snake