PyYAML
click>=8.0.3
cookiecutter
docutils
python-gitlab
snakemake>=8.0.0
snakemake-executor-plugin-slurm
tqdm
pulp<2.8
pandas

[doc]
sphinx_click
sphinx_copybutton
sphinx_rtd_theme
autodocsumm>=0.1.13
autodoc>=0.3
sphinx>=3.1.2
sphinx_automodapi>=0.12
sphinxcontrib-napoleon>=0.7
sphinxcontrib-autoprogram
snakemake
sphinx_design
pandas
toml
