.gitignore
.readthedocs.yml
LICENSE
README.rst
pyproject.toml
docs/Makefile
docs/requirements.txt
docs/source/conf.py
docs/source/index.rst
docs/source/install.rst
docs/source/package.rst
docs/source/snakecdysis.rst
docs/source/usefulfunctions.rst
docs/source/workflow.rst
docs/source/_images/Snakecdysis_logo.png
docs/source/_images/Snakecdysis_logo_short.png
docs/source/_images/directory.png
docs/source/_static/logo.css
snakecdysis/Snakecdysis_logo.png
snakecdysis/VERSION
snakecdysis/__init__.py
snakecdysis/__main__.py
snakecdysis/_version.py
snakecdysis/cli_wrapper.py
snakecdysis/edit_files.py
snakecdysis/global_variable.py
snakecdysis/install.py
snakecdysis/run.py
snakecdysis/snake_wrapper.py
snakecdysis/useful_function.py
snakecdysis.egg-info/PKG-INFO
snakecdysis.egg-info/SOURCES.txt
snakecdysis.egg-info/dependency_links.txt
snakecdysis.egg-info/entry_points.txt
snakecdysis.egg-info/requires.txt
snakecdysis.egg-info/top_level.txt
snakecdysis/scripts/generate_template.py
snakecdysis/templates/setup.py
snakecdysis/templates/PKGNAME/VERSION
snakecdysis/templates/PKGNAME/__init__.py
snakecdysis/templates/PKGNAME/global_variables.py
snakecdysis/templates/PKGNAME/main.py
snakecdysis/templates/PKGNAME/module.py
snakecdysis/templates/PKGNAME/install_files/cluster_config_SLURM.yaml
snakecdysis/templates/PKGNAME/install_files/config.yaml
snakecdysis/templates/PKGNAME/install_files/tools_path.yaml
snakecdysis/templates/PKGNAME/snakefiles/snakefile