Metadata-Version: 2.1
Name: snakebids
Version: 0.3.2
Summary: BIDS integration into snakemake workflows
Home-page: https://github.com/akhanf/snakebids
Author: Ali Khan
Author-email: alik@robarts.ca
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Description-Content-Type: text/x-rst
Requires-Dist: pybids (==0.12.3)
Requires-Dist: snakemake (>=5.28.0)
Requires-Dist: PyYAML (>=5.3.1)
Requires-Dist: cookiecutter (>=1.7.2)


snakebids
=========
.. image:: https://readthedocs.org/projects/snakebids/badge/?version=latest
  :target: https://snakebids.readthedocs.io/en/latest/?badge=latest
  :alt: Documentation Status

Snakemake + BIDS

This package allows you to build BIDS Apps using Snakemake. It offers:


* Flexible data grabbing with PyBIDS, configurable solely by config file entries
* Helper function for creating BIDS paths inside Snakemake workflows/rules
* Command-line invocation of snakemake workflows with BIDS App compliance
* Configurable argument parsing specified using the Snakemake workflow config
* Execution either as command-line BIDS apps or via snakemake executable

To create an app, use the cookiecutter here: http://github.com/akhanf/snakebids-app


