Metadata-Version: 2.1
Name: snakebids
Version: 0.2.0
Summary: BIDS integration into snakemake workflows
Home-page: https://github.com/akhanf/snakebids
Author: Ali Khan
Author-email: alik@robarts.ca
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Requires-Dist: pybids (==0.12.3)
Requires-Dist: snakemake (>=5.28.0)
Requires-Dist: PyYAML (>=5.3.1)

# snakebids
Snakemake + BIDS

This package allows you to build BIDS Apps using Snakemake. It offers:

 * Flexible data grabbing with PyBIDS, configurable solely by config file entries
 * Helper function for creating BIDS paths inside Snakemake workflows/rules
 * Command-line invocation of snakemake workflows with BIDS App compliance
 * Configurable argument parsing specified using the Snakemake workflow config
 * Execution either as command-line BIDS apps or via snakemake executable

See the example template BIDS app in the `template_app` subfolder for an example of usage.

Documentation under construction.




