from smot.algorithm import (
    treemap,
    treefold,
    treecut,
    treepull,
    treepush,
    tips,
    clean,
    factorByField,
    factorByCapture,
    factorByTable,
    isMonophyletic,
    imputeMonophyleticFactors,
    imputePatristicFactors,
    getLeftmost,
    sampleN,
    sampleRandom,
    sampleMonophyletic,
    sampleParaphyletic,
    sampleBalanced,
    colorTree,
    colorMono,
    colorPara,
    filterMono,
)

from smot.parser import read_file, read_text

from smot.format import newick, nexus

from smot.classes import (
    makeTree,
    makeNodeData,
    makeNode,
)

__all__ = [
    "treemap",
    "treefold",
    "treecut",
    "treepull",
    "treepush",
    "tips",
    "clean",
    "factorByField",
    "factorByCapture",
    "factorByTable",
    "isMonophyletic",
    "imputeMonophyleticFactors",
    "imputePatristicFactors",
    "getLeftmost",
    "sampleN",
    "sampleRandom",
    "sampleMonophyletic",
    "sampleParaphyletic",
    "sampleBalanced",
    "colorTree",
    "colorMono",
    "colorPara",
    "filterMono",
    "read_file",
    "read_text",
    "newick",
    "nexus",
    "makeTree",
    "makeNodeData",
    "makeNode",
]
