.coveragerc
.gitignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
requirements_optional.txt
.github/workflows/pypi.yml
.github/workflows/tests.yml
docs/Makefile
docs/SMCPy_documentation.pdf
docs/conf.py
docs/example.rst
docs/index.rst
docs/introduction.rst
docs/source_code.rst
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/example.doctree
docs/_build/doctrees/index.doctree
docs/_build/doctrees/introduction.doctree
docs/_build/doctrees/source_code.doctree
docs/_build/html/.buildinfo
docs/_build/html/.nojekyll
docs/_build/html/example.html
docs/_build/html/genindex.html
docs/_build/html/index.html
docs/_build/html/introduction.html
docs/_build/html/objects.inv
docs/_build/html/py-modindex.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/_build/html/source_code.html
docs/_build/html/_modules/index.html
docs/_build/html/_modules/smcpy/mcmc/mcmc_sampler.html
docs/_build/html/_modules/smcpy/particles/particle.html
docs/_build/html/_modules/smcpy/particles/particle_chain.html
docs/_build/html/_modules/smcpy/smc/smc_sampler.html
docs/_build/html/_sources/example.rst.txt
docs/_build/html/_sources/index.rst.txt
docs/_build/html/_sources/introduction.rst.txt
docs/_build/html/_sources/source_code.rst.txt
docs/_build/html/_static/ajax-loader.gif
docs/_build/html/_static/alabaster.css
docs/_build/html/_static/basic.css
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docs/_build/html/_static/doctools.js
docs/_build/html/_static/documentation_options.js
docs/_build/html/_static/jquery-3.2.1.js
docs/_build/html/_static/jquery.js
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docs/_build/latex/LICRcyr2utf8.xdy
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docs/_build/latex/Makefile
docs/_build/latex/SMCPy.tex
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docs/_build/latex/latexmkrc
docs/_build/latex/make.bat
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docs/_build/latex/sphinxhowto.cls
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examples/helper_functions.py
examples/checkpointing/run_example.py
examples/likelihood_functions/hierarchical_example/generate_data.py
examples/likelihood_functions/hierarchical_example/plot_results.py
examples/likelihood_functions/hierarchical_example/run_example.py
examples/likelihood_functions/multisource_example/run_example.py
examples/likelihood_functions/multivariate_normal_example/run_example.py
examples/linear_example/pairwise.png
examples/linear_example/run_example_adaptive.py
examples/linear_example/run_example_adaptive_unknown_std.py
examples/linear_example/run_example_fixed.py
examples/linear_example/run_example_max_steps.py
examples/linear_example/run_readme.py
examples/mcmc_examples/geweke_example/run_example.py
examples/mcmc_examples/simple_example/run_example_known_std.py
examples/mcmc_examples/simple_example/run_example_unknown_std.py
examples/mpi_example/run_adaptive_example.py
examples/mpi_example/run_fixed_example.py
examples/priors/run_example_constrained_prior.py
examples/proposal_example/run_example.py
examples/spring_mass/noisy_data.txt
examples/spring_mass/run_example.py
examples/spring_mass/spring_mass_model.py
examples/spring_mass/spring_mass_smc_example.png
smcpy/__init__.py
smcpy/hierarch_log_likelihoods.py
smcpy/log_likelihoods.py
smcpy/paths.py
smcpy/priors.py
smcpy/proposals.py
smcpy/resampler_rngs.py
smcpy.egg-info/PKG-INFO
smcpy.egg-info/SOURCES.txt
smcpy.egg-info/dependency_links.txt
smcpy.egg-info/requires.txt
smcpy.egg-info/top_level.txt
smcpy/mcmc/__init__.py
smcpy/mcmc/kernel_base.py
smcpy/mcmc/parallel_vector_mcmc.py
smcpy/mcmc/vector_mcmc.py
smcpy/mcmc/vector_mcmc_kernel.py
smcpy/smc/__init__.py
smcpy/smc/initializer.py
smcpy/smc/mutator.py
smcpy/smc/particles.py
smcpy/smc/samplers.py
smcpy/smc/updater.py
smcpy/utils/__init__.py
smcpy/utils/checks.py
smcpy/utils/context_manager.py
smcpy/utils/geweke.py
smcpy/utils/intervals.py
smcpy/utils/mpi_utils.py
smcpy/utils/noise_generator.py
smcpy/utils/plotter.py
smcpy/utils/progress_bar.py
smcpy/utils/properties.py
smcpy/utils/single_rank_comm.py
smcpy/utils/storage.py
tests/.run_tests.sh
tests/integration/test_parallel_evaluate.py
tests/integration/test_single_param_cov.py
tests/unit/conftest.py
tests/unit/test_geweke.py
tests/unit/test_hierarchical_likelihoods.py
tests/unit/test_initializer.py
tests/unit/test_interval_utility.py
tests/unit/test_kernel_overrides.py
tests/unit/test_likelihoods.py
tests/unit/test_mpi_utils.py
tests/unit/test_mutator.py
tests/unit/test_noise_generator.py
tests/unit/test_parallel_mcmc.py
tests/unit/test_particles.py
tests/unit/test_priors.py
tests/unit/test_progress_bar.py
tests/unit/test_proposal.py
tests/unit/test_sampler_w_checkpointing.py
tests/unit/test_samplers.py
tests/unit/test_single_rank_comm.py
tests/unit/test_storage.py
tests/unit/test_updater.py
tests/unit/test_vector_mcmc.py
tests/unit/test_vector_mcmc_kernel.py