.travis.yml
AUTHORS
ChangeLog
LICENSE
README.rst
install.sh
requirements.txt
setup.cfg
setup.py
upload_pypi.sh
SMBL.egg-info/PKG-INFO
SMBL.egg-info/SOURCES.txt
SMBL.egg-info/dependency_links.txt
SMBL.egg-info/not-zip-safe
SMBL.egg-info/pbr.json
SMBL.egg-info/requires.txt
SMBL.egg-info/top_level.txt
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
examples/.gitignore
examples/Snakefile
smbl/__init__.py
smbl/include_all.snake
smbl/fasta/__init__.py
smbl/fasta/fasta.snake
smbl/fasta/fastafile.py
smbl/messages/__init__.py
smbl/prog/__init__.py
smbl/prog/prog.snake
smbl/prog/plugins/__init__.py
smbl/prog/plugins/_program.py
smbl/prog/plugins/art.py
smbl/prog/plugins/bcftools.py
smbl/prog/plugins/bfast.py
smbl/prog/plugins/bowtie.py
smbl/prog/plugins/bwa.py
smbl/prog/plugins/cmake.py
smbl/prog/plugins/curesim.py
smbl/prog/plugins/deez.py
smbl/prog/plugins/drfast.py
smbl/prog/plugins/dwgsim.py
smbl/prog/plugins/freec.py
smbl/prog/plugins/gem.py
smbl/prog/plugins/gnuplot.py
smbl/prog/plugins/htslib.py
smbl/prog/plugins/kallisto.py
smbl/prog/plugins/last.py
smbl/prog/plugins/mrfast.py
smbl/prog/plugins/mrsfast.py
smbl/prog/plugins/pbsim.py
smbl/prog/plugins/perm.py
smbl/prog/plugins/picard.py
smbl/prog/plugins/sambamba.py
smbl/prog/plugins/samtools.py
smbl/prog/plugins/seqan.py
smbl/prog/plugins/sirfast.py
smbl/prog/plugins/storm.py
smbl/prog/plugins/twobittofa.py
smbl/prog/plugins/wgsim.py
smbl/prog/plugins/xs.py
smbl/prog/plugins/deprec/gmap_gsnap.py
smbl/utils/__init__.py
smbl/utils/clean.py
smbl/utils/platforms.py
smbl/utils/rule.py
smbl/utils/shell.py
tests/Snakefile.all_compatible_programs
tests/Snakefile.all_fastas
tests/Snakefile.all_programs
tests/Snakefile.own_fasta
tests/pytest_plugins.py
tests/test_pytest_plugin.sh
tests/tests_examples.sh
tests/tests_fa.sh
tests/tests_mt.sh
tests/tests_st.sh