.gitignore
.travis.yml
Dockerfile
LICENSE.txt
MANIFEST.in
README.rst
pyproject.toml
requirements.txt
setup.py
.github/workflows/python-package.yml
.github/workflows/release.yml
recipes/smaca/meta.yaml
smaca/__init__.py
smaca/bam.py
smaca/cli.py
smaca/constants.py
smaca/sma.py
smaca/test_results.py
smaca/utils.py
smaca.egg-info/PKG-INFO
smaca.egg-info/SOURCES.txt
smaca.egg-info/dependency_links.txt
smaca.egg-info/entry_points.txt
smaca.egg-info/requires.txt
smaca.egg-info/top_level.txt
smaca/data/.gitignore
smaca/data/151002_7001448_0359_AC7F6GANXX_Sample_HG002-EEogPU_v02-KIT-Av5_AGATGTAC_L008.posiSrt.markDup.includedRegions.bam
smaca/data/151002_7001448_0359_AC7F6GANXX_Sample_HG002-EEogPU_v02-KIT-Av5_AGATGTAC_L008.posiSrt.markDup.includedRegions.bam.bai
smaca/data/HG007.GRCh38_full_plus_hs38d1_analysis_set_minus_alts.100x.includedRegions.downSampled.bam
smaca/data/HG007.GRCh38_full_plus_hs38d1_analysis_set_minus_alts.100x.includedRegions.downSampled.bam.bai
smaca/data/HG007.hs37d5.100x.includedRegions.downSampled.bam
smaca/data/HG007.hs37d5.100x.includedRegions.downSampled.bam.bai
smaca/data/included_regions_hg19.bed
smaca/data/included_regions_hg38.bed
smaca/data/included_regions_hs37d5.bed