Metadata-Version: 2.0
Name: sinto
Version: 0.4.2
Summary: sinto: tools for single-cell data processing
Home-page: https://github.com/timoast/sinto
Author: Tim Stuart
Author-email: tstuart@nygenome.org
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Description-Content-Type: text/x-rst
Requires-Dist: numpy
Requires-Dist: pysam (>=0.8)
Requires-Dist: scipy

Sinto: single-cell analysis tools
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.. image:: https://badge.fury.io/py/sinto.svg
    :target: https://badge.fury.io/py/sinto

.. image:: https://pepy.tech/badge/sinto
    :target: https://pepy.tech/project/sinto

Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:

- Subset reads from a BAM file by cell barcode
- Create a scATAC-seq fragments file from a BAM file
- Add read tags to a BAM file according to cell barcode information

Read the documentation at https://timoast.github.io/sinto




