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CODE_OF_CONDUCT.md
CONTRIBUTING.md
Justfile
LICENSE
README.md
environment.yml
file_format.md
pyproject.toml
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benchmarks/download_benchmark_resources.py
benchmarks/upload_benchmark_resources.py
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docs/installation.rst
docs/modules.rst
examples/Tutorial_cellpack.ipynb
examples/Tutorial_custom.ipynb
examples/Tutorial_cytosim.ipynb
examples/Tutorial_filters.ipynb
examples/Tutorial_mcell.ipynb
examples/Tutorial_md.ipynb
examples/Tutorial_medyan.ipynb
examples/Tutorial_nerdss.ipynb
examples/Tutorial_physicell.ipynb
examples/Tutorial_plots.ipynb
examples/Tutorial_readdy.ipynb
examples/Tutorial_smoldyn.ipynb
examples/Tutorial_springsalad.ipynb
examples/__init__.py
examples/img/drag_drop.gif
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simulariumio/constants.py
simulariumio/exceptions.py
simulariumio/file_converter.py
simulariumio/trajectory_converter.py
simulariumio/utils.py
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simulariumio/cellpack/cellpack_converter.py
simulariumio/cellpack/cellpack_data.py
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simulariumio/cytosim/cytosim_converter.py
simulariumio/cytosim/cytosim_data.py
simulariumio/cytosim/cytosim_object_info.py
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simulariumio/data_objects/camera_data.py
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simulariumio/filters/translate_filter.py
simulariumio/mcell/__init__.py
simulariumio/mcell/mcell_converter.py
simulariumio/mcell/mcell_data.py
simulariumio/md/__init__.py
simulariumio/md/md_converter.py
simulariumio/md/md_data.py
simulariumio/medyan/__init__.py
simulariumio/medyan/medyan_converter.py
simulariumio/medyan/medyan_data.py
simulariumio/nerdss/__init__.py
simulariumio/nerdss/nerdss_converter.py
simulariumio/nerdss/nerdss_data.py
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simulariumio/physicell/__init__.py
simulariumio/physicell/physicell_converter.py
simulariumio/physicell/physicell_data.py
simulariumio/physicell/dep/__init__.py
simulariumio/physicell/dep/pyMCDS.py
simulariumio/plot_readers/__init__.py
simulariumio/plot_readers/histogram_plot_reader.py
simulariumio/plot_readers/plot_reader.py
simulariumio/plot_readers/scatter_plot_reader.py
simulariumio/readdy/__init__.py
simulariumio/readdy/readdy_converter.py
simulariumio/readdy/readdy_data.py
simulariumio/readers/__init__.py
simulariumio/readers/binary_info.py
simulariumio/readers/simularium_binary_reader.py
simulariumio/smoldyn/__init__.py
simulariumio/smoldyn/smoldyn_converter.py
simulariumio/smoldyn/smoldyn_data.py
simulariumio/springsalad/__init__.py
simulariumio/springsalad/springsalad_converter.py
simulariumio/springsalad/springsalad_data.py
simulariumio/tests/__init__.py
simulariumio/tests/conftest.py
simulariumio/tests/test_agents_from_lists.py
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simulariumio/tests/converters/test_cellpack_converter.py
simulariumio/tests/converters/test_cytosim_converter.py
simulariumio/tests/converters/test_mcell_converter.py
simulariumio/tests/converters/test_md_converter.py
simulariumio/tests/converters/test_medyan_converter.py
simulariumio/tests/converters/test_nerdss_converter.py
simulariumio/tests/converters/test_physicell_converter.py
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ui-templates/README.md
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