LICENSE
MANIFEST.in
README.md
setup.py
scripts/__init__.py
scripts/create_issues_report.py
scripts/gitter_stats.py
simba/.DS_Store
simba/SimBA.py
simba/SimBA_logo.ico
simba/__init__.py
simba/requirements.txt
simba/assets/.DS_Store
simba/assets/.env
simba/assets/.recent_projects.txt
simba/assets/TheGoldenLab.PNG
simba/assets/UbuntuMono-Regular.ttf
simba/assets/__init__.py
simba/assets/botsort.yml
simba/assets/bytetrack.yml
simba/assets/dash_simba_base.css
simba/assets/fonts/.DS_Store
simba/assets/fonts/Playwrite ES Deco.ttf
simba/assets/fonts/Poppins Bold.ttf
simba/assets/fonts/Poppins Regular.ttf
simba/assets/icons/.DS_Store
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simba/assets/icons/__init__.py
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simba/data_processors/blob_location_computer.py
simba/data_processors/boolean_conditional_calculator.py
simba/data_processors/circling_detector.py
simba/data_processors/cue_light_analyzer.py
simba/data_processors/cue_light_clf_statistics.py
simba/data_processors/cue_light_movement_statistics.py
simba/data_processors/directing_animal_to_bodypart.py
simba/data_processors/directing_other_animals_calculator.py
simba/data_processors/egocentric_aligner.py
simba/data_processors/find_animal_blob_location.py
simba/data_processors/freezing_detector.py
simba/data_processors/fsttc_calculator.py
simba/data_processors/gibbs_sampler.py
simba/data_processors/interpolate.py
simba/data_processors/interpolate_pose.py
simba/data_processors/interpolation_smoothing.py
simba/data_processors/kleinberg_calculator.py
simba/data_processors/light_dark_box_analyzer.py
simba/data_processors/movement_calculator.py
simba/data_processors/mutual_exclusivity_corrector.py
simba/data_processors/pup_retrieval_calculator.py
simba/data_processors/pybursts_calculator.py
simba/data_processors/severity_bout_based_calculator.py
simba/data_processors/severity_calculator.py
simba/data_processors/severity_frame_based_calculator.py
simba/data_processors/smoothing.py
simba/data_processors/spontaneous_alternation_calculator.py
simba/data_processors/timebins_clf_calculator.py
simba/data_processors/timebins_movement_calculator.py
simba/data_processors/cuda/__init__.py
simba/data_processors/cuda/circular_statistics.py
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simba/feature_extractors/feature_extractor_8bps_2_animals.py
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simba/feature_extractors/feature_subsets.py
simba/feature_extractors/gerbil_featurizer.py
simba/feature_extractors/mitra_feature_extractor.py
simba/feature_extractors/perimeter_jit.py
simba/feature_extractors/rat_social_featurizer.py
simba/feature_extractors/straub_tail_analyzer.py
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simba/feature_extractors/misc/count_values_in_range.py
simba/feature_extractors/misc/doctests.py
simba/feature_extractors/misc/egocentrical_aligner.py
simba/feature_extractors/misc/fish_feature_extractor_2022.py
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simba/feature_extractors/misc/graph_creator.py
simba/feature_extractors/misc/make_splash.py
simba/feature_extractors/misc/mutual_exclusive.py
simba/feature_extractors/misc/peaks.py
simba/feature_extractors/misc/read_in_mp.py
simba/feature_extractors/misc/termite_rois.csv
simba/feature_extractors/misc/time_stamp_calculator.py
simba/feature_extractors/misc/video_color.py
simba/feature_extractors/misc/video_rotator.py
simba/feature_extractors/misc/video_rotator_mp.py
simba/labelling/__init__.py
simba/labelling/extract_labelled_frames.py
simba/labelling/extract_labelling_meta.py
simba/labelling/labelling_advanced_interface.py
simba/labelling/labelling_interface.py
simba/labelling/play_annotation_video.py
simba/labelling/standard_labeller.py
simba/labelling/targeted_annotations_clips.py
simba/mixins/.DS_Store
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simba/mixins/abstract_classes.py
simba/mixins/annotator_mixin.py
simba/mixins/circular_statistics.py
simba/mixins/config_reader.py
simba/mixins/feature_extraction_mixin.py
simba/mixins/feature_extraction_supplement_mixin.py
simba/mixins/geometry_mixin.py
simba/mixins/image_mixin.py
simba/mixins/network_mixin.py
simba/mixins/plotting_mixin.py
simba/mixins/pop_up_mixin.py
simba/mixins/pose_importer_mixin.py
simba/mixins/statistics_mixin.py
simba/mixins/timeseries_features_mixin.py
simba/mixins/train_model_mixin.py
simba/mixins/unsupervised_mixin.py
simba/model/__init__.py
simba/model/grid_search_multiclass_rf.py
simba/model/grid_search_rf.py
simba/model/inference_batch.py
simba/model/inference_multiclass_batch.py
simba/model/inference_validation.py
simba/model/ordinal_clf.py
simba/model/sam_inference.py
simba/model/train_multiclass_rf.py
simba/model/train_multilabel_rf.py
simba/model/train_rf.py
simba/model/yolo_fit.py
simba/model/yolo_inference.py
simba/model/yolo_pose_inference.py
simba/model/yolo_pose_track_inference.py
simba/model/yolo_seg_inference.py
simba/model/regression/__init__.py
simba/model/regression/metrics.py
simba/model/regression/model.py
simba/outlier_tools/__init__.py
simba/outlier_tools/outlier_corrector_location.py
simba/outlier_tools/outlier_corrector_location_advanced.py
simba/outlier_tools/outlier_corrector_location_mp.py
simba/outlier_tools/outlier_corrector_movement.py
simba/outlier_tools/outlier_corrector_movement_advanced.py
simba/outlier_tools/outlier_corrector_movement_mp.py
simba/outlier_tools/skip_outlier_correction.py
simba/plotting/.DS_Store
simba/plotting/ROI_feature_visualizer.py
simba/plotting/ROI_feature_visualizer_mp.py
simba/plotting/__init__.py
simba/plotting/blob_plotter.py
simba/plotting/blob_visualizer.py
simba/plotting/circular_feature_overlay_plotter.py
simba/plotting/circular_plotting.py
simba/plotting/clf_validator.py
simba/plotting/clf_validator_mp.py
simba/plotting/cue_light_visualizer.py
simba/plotting/data_plotter.py
simba/plotting/directing_animals_to_bodypart_visualizer.py
simba/plotting/directing_animals_visualizer.py
simba/plotting/directing_animals_visualizer_mp.py
simba/plotting/distance_plotter.py
simba/plotting/distance_plotter_mp.py
simba/plotting/ez_path_plot.py
simba/plotting/frame_mergerer_ffmpeg.py
simba/plotting/gantt_creator.py
simba/plotting/gantt_creator_mp.py
simba/plotting/gantt_plotly.py
simba/plotting/geometry_plotter.py
simba/plotting/heat_mapper_clf.py
simba/plotting/heat_mapper_clf_mp.py
simba/plotting/heat_mapper_location.py
simba/plotting/heat_mapper_location_mp.py
simba/plotting/interactive_probability_grapher.py
simba/plotting/light_dark_box_plotter.py
simba/plotting/path_plotter.py
simba/plotting/path_plotter_mp.py
simba/plotting/plot_clf_results.py
simba/plotting/plot_clf_results_mp.py
simba/plotting/pose_plotter.py
simba/plotting/pose_plotter_mp.py
simba/plotting/probability_plot_creator.py
simba/plotting/probability_plot_creator_mp.py
simba/plotting/roi_plotter.py
simba/plotting/roi_plotter_mp.py
simba/plotting/sam_plotter.py
simba/plotting/shap_agg_stats_visualizer.py
simba/plotting/single_run_model_validation_video.py
simba/plotting/single_run_model_validation_video_mp.py
simba/plotting/spontaneous_alternation_plotter.py
simba/plotting/yolo_pose_track_visualizer.py
simba/plotting/yolo_pose_visualizer.py
simba/plotting/yolo_seg_visualizer.py
simba/plotting/yolo_visualize.py
simba/plotting/tools/__init__.py
simba/plotting/tools/tkinter_tools.py
simba/pose_configurations/.DS_Store
simba/pose_configurations/__init__.py
simba/pose_configurations/bp_names/__init__.py
simba/pose_configurations/bp_names/bp_names.csv
simba/pose_configurations/configuration_names/__init__.py
simba/pose_configurations/configuration_names/pose_config_names.csv
simba/pose_configurations/no_animals/__init__.py
simba/pose_configurations/no_animals/no_animals.csv
simba/pose_configurations/schematics/1.png
simba/pose_configurations/schematics/10.png
simba/pose_configurations/schematics/11.png
simba/pose_configurations/schematics/12.png
simba/pose_configurations/schematics/13.png
simba/pose_configurations/schematics/14.png
simba/pose_configurations/schematics/15.png
simba/pose_configurations/schematics/16.png
simba/pose_configurations/schematics/2.png
simba/pose_configurations/schematics/3.png
simba/pose_configurations/schematics/4.png
simba/pose_configurations/schematics/5.png
simba/pose_configurations/schematics/6.png
simba/pose_configurations/schematics/7.png
simba/pose_configurations/schematics/8.png
simba/pose_configurations/schematics/9.png
simba/pose_importers/.DS_Store
simba/pose_importers/__init__.py
simba/pose_importers/dlc_importer_csv.py
simba/pose_importers/facemap_h5_importer.py
simba/pose_importers/import_mars.py
simba/pose_importers/madlc_importer.py
simba/pose_importers/read_DANNCE_mat.py
simba/pose_importers/simba_blob_importer.py
simba/pose_importers/sleap_csv_importer.py
simba/pose_importers/sleap_h5_importer.py
simba/pose_importers/sleap_slp_importer.py
simba/pose_importers/superanimal_import.py
simba/pose_importers/trk_importer.py
simba/pose_importers/misc/__init__.py
simba/pose_importers/misc/apt_trk_importer.py
simba/pose_processors/__init__.py
simba/pose_processors/pose_reset.py
simba/pose_processors/remove_keypoints.py
simba/pose_processors/reorganize_keypoint.py
simba/pose_processors/reverse_pose.py
simba/roi_tools/.DS_Store
simba/roi_tools/ROI_analyzer.py
simba/roi_tools/ROI_clf_calculator.py
simba/roi_tools/ROI_directing_analyzer.py
simba/roi_tools/ROI_feature_analyzer.py
simba/roi_tools/ROI_size_standardizer.py
simba/roi_tools/ROI_time_bin_calculator.py
simba/roi_tools/__init__.py
simba/roi_tools/interactive_modifier_ui.py
simba/roi_tools/interactive_roi_modifier_tkinter.py
simba/roi_tools/roi_aggregate_statistics_analyzer.py
simba/roi_tools/roi_selector_circle_tkinter.py
simba/roi_tools/roi_selector_polygon_tkinter.py
simba/roi_tools/roi_selector_rectangle_tkinter.py
simba/roi_tools/roi_time_bins_analyzer.py
simba/roi_tools/roi_ui.py
simba/roi_tools/roi_ui_mixin.py
simba/roi_tools/roi_utils.py
simba/third_party_label_appenders/.DS_Store
simba/third_party_label_appenders/BENTO_appender.py
simba/third_party_label_appenders/BORIS_appender.py
simba/third_party_label_appenders/__init__.py
simba/third_party_label_appenders/boris_source_cleaner.py
simba/third_party_label_appenders/converters.py
simba/third_party_label_appenders/deepethogram_importer.py
simba/third_party_label_appenders/ethovision_import.py
simba/third_party_label_appenders/observer_importer.py
simba/third_party_label_appenders/solomon_importer.py
simba/third_party_label_appenders/third_party_appender.py
simba/third_party_label_appenders/tools.py
simba/third_party_label_appenders/transform/__init__.py
simba/third_party_label_appenders/transform/coco_keypoints_to_yolo.py
simba/third_party_label_appenders/transform/coco_keypoints_to_yolo_bbox.py
simba/third_party_label_appenders/transform/coco_keypoints_to_yolo_seg.py
simba/third_party_label_appenders/transform/dlc_ma_h5_to_yolo.py
simba/third_party_label_appenders/transform/dlc_to_labelme.py
simba/third_party_label_appenders/transform/dlc_to_yolo.py
simba/third_party_label_appenders/transform/labelme_to_df.py
simba/third_party_label_appenders/transform/labelme_to_dlc.py
simba/third_party_label_appenders/transform/labelme_to_yolo.py
simba/third_party_label_appenders/transform/labelme_to_yolo_keypoints.py
simba/third_party_label_appenders/transform/labelme_to_yolo_seg.py
simba/third_party_label_appenders/transform/simba_roi_to_yolo.py
simba/third_party_label_appenders/transform/simba_to_yolo.py
simba/third_party_label_appenders/transform/simba_to_yolo_seg.py
simba/third_party_label_appenders/transform/sleap_csv_to_yolo.py
simba/third_party_label_appenders/transform/sleap_h5_to_yolo.py
simba/third_party_label_appenders/transform/sleap_to_yolo.py
simba/third_party_label_appenders/transform/utils.py
simba/third_party_label_appenders/transform/yolo_to_imgs.py
simba/ui/.DS_Store
simba/ui/__init__.py
simba/ui/blob_quick_check_interface.py
simba/ui/blob_tracker_ui.py
simba/ui/create_project_ui.py
simba/ui/get_tree_view.py
simba/ui/import_pose_frame.py
simba/ui/import_videos_frame.py
simba/ui/machine_model_settings_ui.py
simba/ui/px_to_mm_ui.py
simba/ui/tkinter_functions.py
simba/ui/user_defined_pose_creator.py
simba/ui/video_info_ui.py
simba/ui/pop_ups/.DS_Store
simba/ui/pop_ups/__init__.py
simba/ui/pop_ups/about_simba_pop_up.py
simba/ui/pop_ups/animal_directing_other_animals_pop_up.py
simba/ui/pop_ups/append_roi_features_animals_pop_up.py
simba/ui/pop_ups/append_roi_features_bodypart_pop_up.py
simba/ui/pop_ups/archive_files_pop_up.py
simba/ui/pop_ups/batch_preprocess_pop_up.py
simba/ui/pop_ups/blob_visualizer_pop_up.py
simba/ui/pop_ups/boolean_conditional_slicer_pup_up.py
simba/ui/pop_ups/check_videos_seekable_pop_up.py
simba/ui/pop_ups/clf_add_remove_print_pop_up.py
simba/ui/pop_ups/clf_annotation_counts_pop_up.py
simba/ui/pop_ups/clf_by_roi_pop_up.py
simba/ui/pop_ups/clf_by_timebins_pop_up.py
simba/ui/pop_ups/clf_descriptive_statistics_pop_up.py
simba/ui/pop_ups/clf_plot_pop_up.py
simba/ui/pop_ups/clf_probability_plot_pop_up.py
simba/ui/pop_ups/clf_validation_plot_pop_up.py
simba/ui/pop_ups/coco_keypoints_to_yolo_popup.py
simba/ui/pop_ups/create_user_defined_pose_configuration_pop_up.py
simba/ui/pop_ups/csv_2_parquet_pop_up.py
simba/ui/pop_ups/cue_light_clf_analyzer_popup.py
simba/ui/pop_ups/cue_light_data_analyzer_popup.py
simba/ui/pop_ups/cue_light_main_popup.py
simba/ui/pop_ups/cue_light_movement_analyzer_popup.py
simba/ui/pop_ups/cue_light_visualizer_popup.py
simba/ui/pop_ups/data_plot_pop_up.py
simba/ui/pop_ups/delete_all_rois_pop_up.py
simba/ui/pop_ups/directing_animal_to_bodypart_plot_pop_up.py
simba/ui/pop_ups/directing_other_animals_plot_pop_up.py
simba/ui/pop_ups/direction_animal_to_bodypart_settings_pop_up.py
simba/ui/pop_ups/distance_plot_pop_up.py
simba/ui/pop_ups/dlc_annotations_to_labelme_popup.py
simba/ui/pop_ups/dlc_h5_inference_to_yolo_popup.py
simba/ui/pop_ups/dlc_to_labelme_popup.py
simba/ui/pop_ups/dlc_to_yolo_keypoints_popup.py
simba/ui/pop_ups/egocentric_alignment_pop_up.py
simba/ui/pop_ups/fsttc_pop_up.py
simba/ui/pop_ups/gantt_pop_up.py
simba/ui/pop_ups/heatmap_clf_pop_up.py
simba/ui/pop_ups/heatmap_location_pop_up.py
simba/ui/pop_ups/initialize_blob_tracking_pop_up.py
simba/ui/pop_ups/interpolate_pop_up.py
simba/ui/pop_ups/kleinberg_pop_up.py
simba/ui/pop_ups/labelme_bbox_to_yolo_bbox_popup.py
simba/ui/pop_ups/labelme_dir_to_csv_popup.py
simba/ui/pop_ups/labelme_to_df_popup.py
simba/ui/pop_ups/labelme_to_imgs_popup.py
simba/ui/pop_ups/make_path_plot_pop_up.py
simba/ui/pop_ups/min_max_draw_size_popup.py
simba/ui/pop_ups/movement_analysis_pop_up.py
simba/ui/pop_ups/movement_analysis_time_bins_pop_up.py
simba/ui/pop_ups/multiple_videos_to_frames_popup.py
simba/ui/pop_ups/mutual_exclusivity_pop_up.py
simba/ui/pop_ups/outlier_settings_pop_up.py
simba/ui/pop_ups/path_plot_pop_up.py
simba/ui/pop_ups/pose_bp_drop_pop_up.py
simba/ui/pop_ups/pose_reorganizer_pop_up.py
simba/ui/pop_ups/print_video_meta_popup.py
simba/ui/pop_ups/pup_retrieval_pop_up.py
simba/ui/pop_ups/quick_path_plot_pop_up.py
simba/ui/pop_ups/remove_roi_features_pop_up.py
simba/ui/pop_ups/roi_aggregate_stats_popup.py
simba/ui/pop_ups/roi_analysis_pop_up.py
simba/ui/pop_ups/roi_analysis_time_bins_pop_up.py
simba/ui/pop_ups/roi_features_plot_pop_up.py
simba/ui/pop_ups/roi_size_standardizer_popup.py
simba/ui/pop_ups/roi_tracking_plot_pop_up.py
simba/ui/pop_ups/roi_video_table_pop_up.py
simba/ui/pop_ups/select_video_for_labelling_popup.py
simba/ui/pop_ups/select_video_for_pseudo_labelling_popup.py
simba/ui/pop_ups/set_machine_model_parameters_pop_up.py
simba/ui/pop_ups/severity_analysis_pop_up.py
simba/ui/pop_ups/simba_rois_to_yolo_pop_up.py
simba/ui/pop_ups/simba_to_yolo_keypoints_popup.py
simba/ui/pop_ups/single_video_to_frames_popup.py
simba/ui/pop_ups/sleap_annotations_to_yolo_popup.py
simba/ui/pop_ups/sleap_csv_predictions_to_yolo_popup.py
simba/ui/pop_ups/sleap_h5_inference_to_yolo_popup.py
simba/ui/pop_ups/smoothing_popup.py
simba/ui/pop_ups/spontaneous_alternation_pop_up.py
simba/ui/pop_ups/subset_feature_extractor_pop_up.py
simba/ui/pop_ups/targeted_annotation_clips_pop_up.py
simba/ui/pop_ups/third_party_annotator_appender_pop_up.py
simba/ui/pop_ups/validation_plot_pop_up.py
simba/ui/pop_ups/video_processing_pop_up.py
simba/ui/pop_ups/visualize_pose_in_dir_pop_up.py
simba/ui/pop_ups/yolo_inference_popup.py
simba/ui/pop_ups/yolo_plot_results.py
simba/ui/pop_ups/yolo_pose_train_popup.py
simba/unsupervised/.DS_Store
simba/unsupervised/__init__.py
simba/unsupervised/bout_aggregator.py
simba/unsupervised/cluster_frequentist_calculator.py
simba/unsupervised/cluster_validation_calculator.py
simba/unsupervised/cluster_video_visualizer.py
simba/unsupervised/cluster_xai_calculator.py
simba/unsupervised/clusterer_comparison_calculator.py
simba/unsupervised/data_extractor.py
simba/unsupervised/data_map.yaml
simba/unsupervised/dataset_creator.py
simba/unsupervised/dbcv_calculator.py
simba/unsupervised/embedding_correlation_calculator.py
simba/unsupervised/enums.py
simba/unsupervised/grid_search_visualizers.py
simba/unsupervised/hdbscan_clusterer.py
simba/unsupervised/outlier_detector.py
simba/unsupervised/tsne.py
simba/unsupervised/umap_embedder.py
simba/unsupervised/unsupervised_main.py
simba/unsupervised/pop_ups/.DS_Store
simba/unsupervised/pop_ups/cluster_frequentist_stats_popup.py
simba/unsupervised/pop_ups/cluster_validation_pop_up.py
simba/unsupervised/pop_ups/cluster_videos_popup.py
simba/unsupervised/pop_ups/cluster_xai_popup.py
simba/unsupervised/pop_ups/clusterer_comparison_popup.py
simba/unsupervised/pop_ups/data_extractor_popup.py
simba/unsupervised/pop_ups/embedding_correlations_popup.py
simba/unsupervised/pop_ups/fit_cluster_popup.py
simba/unsupervised/pop_ups/fit_dim_reduction_popup.py
simba/unsupervised/pop_ups/grid_search_visualizer_popup.py
simba/unsupervised/pop_ups/print_embedding_info_popup.py
simba/unsupervised/pop_ups/transform_cluster_popup.py
simba/unsupervised/pop_ups/transform_dim_reduction_popup.py
simba/utils/.DS_Store
simba/utils/__init__.py
simba/utils/checks.py
simba/utils/config_creator.py
simba/utils/custom_feature_extractor.py
simba/utils/data.py
simba/utils/enums.py
simba/utils/errors.py
simba/utils/lookups.py
simba/utils/printing.py
simba/utils/read_write.py
simba/utils/warnings.py
simba/utils/yolo.py
simba/utils/cli/__init__.py
simba/utils/cli/cli_tools.py
simba/video_processors/.DS_Store
simba/video_processors/__init__.py
simba/video_processors/async_frame_reader.py
simba/video_processors/batch_process_create_ffmpeg_commands.py
simba/video_processors/batch_process_menus.py
simba/video_processors/blob_tracking_executor.py
simba/video_processors/brightness_contrast_ui.py
simba/video_processors/calculate_px_dist.py
simba/video_processors/clahe_ui.py
simba/video_processors/egocentric_video_rotator.py
simba/video_processors/extract_frames.py
simba/video_processors/extract_seqframes.py
simba/video_processors/multi_cropper.py
simba/video_processors/roi_selector.py
simba/video_processors/roi_selector_circle.py
simba/video_processors/roi_selector_polygon.py
simba/video_processors/video_processing.py
simba/video_processors/videos_to_frames.py
simba_uw_tf_dev.egg-info/PKG-INFO
simba_uw_tf_dev.egg-info/SOURCES.txt
simba_uw_tf_dev.egg-info/dependency_links.txt
simba_uw_tf_dev.egg-info/entry_points.txt
simba_uw_tf_dev.egg-info/requires.txt
simba_uw_tf_dev.egg-info/top_level.txt