AUTHORS.rst
CONTRIBUTING.rst
DEVNOTES.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/design.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
docs/_build/html/_static/file.png
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/source/modules.rst
docs/source/silvio.catalog.rst
docs/source/silvio.extensions.modules.rst
docs/source/silvio.extensions.records.gene.rst
docs/source/silvio.extensions.records.rst
docs/source/silvio.extensions.rst
docs/source/silvio.extensions.sets.rst
docs/source/silvio.extensions.sets.shotgun_sequencing.rst
docs/source/silvio.extensions.tools.rst
docs/source/silvio.extensions.utils.rst
docs/source/silvio.rst
src/silvio/FermProSimFun.py
src/silvio/MetEngSimFun.py
src/silvio/__init__.py
src/silvio/config.py
src/silvio/events.py
src/silvio/experiment.py
src/silvio/host.py
src/silvio/module.py
src/silvio/outcome.py
src/silvio/random.py
src/silvio/record.py
src/silvio/registry.py
src/silvio/tool.py
src/silvio/utils.py
src/silvio.egg-info/PKG-INFO
src/silvio.egg-info/SOURCES.txt
src/silvio.egg-info/dependency_links.txt
src/silvio.egg-info/not-zip-safe
src/silvio.egg-info/requires.txt
src/silvio.egg-info/top_level.txt
src/silvio/catalog/GroExpSim.py
src/silvio/catalog/RecExpSim.py
src/silvio/catalog/StrExpSim.py
src/silvio/catalog/__init__.py
src/silvio/data/CodonTriplets.csv
src/silvio/data/expression_predictor/Ecol-Promoter-AddParams.pkl
src/silvio/data/expression_predictor/Ecol-Promoter-predictor.pkl
src/silvio/data/expression_predictor/Ptai-Promoter-AddParams.pkl
src/silvio/data/expression_predictor/Ptai-Promoter-predictor.pkl
src/silvio/data/metabolic_model/e_coli_core.xml
src/silvio/data/metabolic_model/iJN746.xml
src/silvio/extensions/__init__.py
src/silvio/extensions/all_events.py
src/silvio/extensions/common.py
src/silvio/extensions/modules/__init__.py
src/silvio/extensions/modules/genome_expression.py
src/silvio/extensions/modules/genome_library.py
src/silvio/extensions/modules/genome_list.py
src/silvio/extensions/modules/growth_behaviour.py
src/silvio/extensions/modules/metabolic_flux.py
src/silvio/extensions/modules/phenotype_size.py
src/silvio/extensions/records/__init__.py
src/silvio/extensions/records/growth_record.py
src/silvio/extensions/records/gene/__init__.py
src/silvio/extensions/records/gene/crafted_gene.py
src/silvio/extensions/records/gene/gene.py
src/silvio/extensions/records/gene/localized_gene.py
src/silvio/extensions/records/gene/stub_gene.py
src/silvio/extensions/sets/__init__.py
src/silvio/extensions/sets/shotgun_sequencing/__init__.py
src/silvio/extensions/sets/shotgun_sequencing/assembly.py
src/silvio/extensions/sets/shotgun_sequencing/datatype.py
src/silvio/extensions/sets/shotgun_sequencing/evaluation.py
src/silvio/extensions/sets/shotgun_sequencing/sequencing.py
src/silvio/extensions/sets/shotgun_sequencing/storage.py
src/silvio/extensions/sets/shotgun_sequencing/visualization.py
src/silvio/extensions/tools/__init__.py
src/silvio/extensions/tools/shotgun_sequencing.py
src/silvio/extensions/utils/__init__.py
src/silvio/extensions/utils/laboratory.py
src/silvio/extensions/utils/misc.py
src/silvio/extensions/utils/shotgun_sequencing.py
src/silvio/extensions/utils/transform.py
src/silvio/extensions/utils/visual.py
tests/__init__.py
tests/test_basic.py