MANIFEST.in
README.md
setup.py
SigProfilerMatrixGenerator/__init__.py
SigProfilerMatrixGenerator/install.py
SigProfilerMatrixGenerator/version.py
SigProfilerMatrixGenerator.egg-info/PKG-INFO
SigProfilerMatrixGenerator.egg-info/SOURCES.txt
SigProfilerMatrixGenerator.egg-info/dependency_links.txt
SigProfilerMatrixGenerator.egg-info/not-zip-safe
SigProfilerMatrixGenerator.egg-info/requires.txt
SigProfilerMatrixGenerator.egg-info/top_level.txt
SigProfilerMatrixGenerator/references/__init__.py
SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv
SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt
SigProfilerMatrixGenerator/references/chromosomes/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv
SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv
SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt
SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv
SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list
SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/rn6_transcripts.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt
SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt
SigProfilerMatrixGenerator/references/matrix/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BED/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BRCA_example/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/BRCA_example/SNV/BRCA_example_subs_simple.txt
SigProfilerMatrixGenerator/references/vcf_files/BRCA_example/SNV/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/GRCh37_bench/GRCh37_bench.vcf
SigProfilerMatrixGenerator/references/vcf_files/GRCh37_bench/__init__.py
SigProfilerMatrixGenerator/references/vcf_files/GRCh38_bench/GRCh38_bench.vcf
SigProfilerMatrixGenerator/references/vcf_files/mm10_bench/mm10_bench.vcf
SigProfilerMatrixGenerator/references/vcf_files/mm9_bench/mm9_bench.vcf
SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator.py
SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py
SigProfilerMatrixGenerator/scripts/__init__.py
SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py
SigProfilerMatrixGenerator/scripts/save_chrom_strings.py
SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py
SigProfilerMatrixGenerator/scripts/save_context_distribution.py
SigProfilerMatrixGenerator/scripts/save_tsb_192.py
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py
SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt
SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt
SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt