LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
SigProfilerExtractor/__init__.py
SigProfilerExtractor/estimate_best_solution.py
SigProfilerExtractor/nmf_cpu.py
SigProfilerExtractor/nmf_gpu.py
SigProfilerExtractor/sigpro.py
SigProfilerExtractor/sigprofilerextractor_cli.py
SigProfilerExtractor/subroutines.py
SigProfilerExtractor/version.py
SigProfilerExtractor.egg-info/PKG-INFO
SigProfilerExtractor.egg-info/SOURCES.txt
SigProfilerExtractor.egg-info/dependency_links.txt
SigProfilerExtractor.egg-info/entry_points.txt
SigProfilerExtractor.egg-info/not-zip-safe
SigProfilerExtractor.egg-info/requires.txt
SigProfilerExtractor.egg-info/top_level.txt
SigProfilerExtractor/controllers/cli_controller.py
SigProfilerExtractor/data/CNVInput/Battenberg_test.tsv
SigProfilerExtractor/data/CSVInput/csv_example.csv
SigProfilerExtractor/data/MatObjInput/21_breast_WGS_substitutions.mat
SigProfilerExtractor/data/ReferenceFiles/CNV_features.tsv
SigProfilerExtractor/data/ReferenceFiles/CN_classes_dictionary.txt
SigProfilerExtractor/data/TextInput/Samples_CNV.txt
SigProfilerExtractor/data/TextInput/Samples_DBS.txt
SigProfilerExtractor/data/TextInput/Samples_ID.txt
SigProfilerExtractor/data/TextInput/Samples_SBS.txt
SigProfilerExtractor/data/TextInput/Samples_SV.txt
SigProfilerExtractor/data/VCFInput/PD3851a.vcf
SigProfilerExtractor/data/VCFInput/PD3890a.vcf
SigProfilerExtractor/data/VCFInput/PD3904a.vcf
SigProfilerExtractor/data/VCFInput/PD3905a.vcf
SigProfilerExtractor/data/VCFInput/PD3945a.vcf