README.md
setup.py
SICER2.egg-info/PKG-INFO
SICER2.egg-info/SOURCES.txt
SICER2.egg-info/dependency_links.txt
SICER2.egg-info/requires.txt
SICER2.egg-info/top_level.txt
bin/recognicer
bin/recognicer_df
bin/sicer
bin/sicer_df
sicer/__init__.py
sicer/lib/Background_island_probscore_statistics.py
sicer/lib/GenomeData.py
sicer/lib/Utility.py
sicer/lib/__init__.py
sicer/lib/associate_tags_with_regions.py
sicer/main/__init__.py
sicer/main/run_RECOGNICER.py
sicer/main/run_RECOGNICER_df.py
sicer/main/run_SICER.py
sicer/main/run_SICER_df.py
sicer/src/__init__.py
sicer/src/associate_tags_with_chip_and_control_w_fc_q.py
sicer/src/coarsegraining.c
sicer/src/compare_two_libraries_on_islands.py
sicer/src/filter_islands_by_significance.py
sicer/src/filter_raw_tags_by_islands.py
sicer/src/find_islands_in_pr.py
sicer/src/find_union_islands.py
sicer/src/make_normalized_wig.py
sicer/src/remove_redundant_reads.py
sicer/src/run_make_graph_file_by_chrom.py
sicer/utility/__init__.py
sicer/utility/calculate_cross_correlation_long_range.py
sicer/utility/make_graph_file.py