"""
Alignment algorithms using Torch-based scoring functions.
"""
from shepherd_score.alignment._torch import (
    objective_ROCS_overlay,
    score_ROCS_overlay_with_avoid,
    objective_ROCS_overlay_with_avoid,
    objective_ROCS_esp_overlay,
    objective_esp_combo_score_overlay,
    objective_pharm_overlay,
    crippen_align,
    optimize_ROCS_overlay,
    optimize_ROCS_esp_overlay,
    optimize_esp_combo_score_overlay,
    optimize_pharm_overlay,
    _initialize_se3_params,
    _initialize_se3_params_with_translations,
    _get_45_fibo,
    _quats_from_fibo,
)
from shepherd_score.alignment._torch_analytical import (
    optimize_ROCS_overlay_analytical,
    optimize_ROCS_esp_overlay_analytical,
    optimize_pharm_overlay_analytical,
)

__all__ = [
    "objective_ROCS_overlay",
    "score_ROCS_overlay_with_avoid",
    "objective_ROCS_overlay_with_avoid",
    "objective_ROCS_esp_overlay",
    "objective_esp_combo_score_overlay",
    "objective_pharm_overlay",
    "crippen_align",
    "optimize_ROCS_overlay",
    "optimize_ROCS_overlay_analytical",
    "optimize_ROCS_esp_overlay",
    "optimize_ROCS_esp_overlay_analytical",
    "optimize_esp_combo_score_overlay",
    "optimize_pharm_overlay",
    "optimize_pharm_overlay_analytical",
    "_initialize_se3_params",
    "_initialize_se3_params_with_translations",
    "_get_45_fibo",
    "_quats_from_fibo",
]
