Metadata-Version: 2.1
Name: sfaira
Version: 0.3.7
Summary: sfaira is a model and a data repository for single-cell data in a single python package.
Home-page: UNKNOWN
Author: theislab
Author-email: david.fischer@helmholtz-muenchen.de
License: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Description-Content-Type: text/markdown
Provides-Extra: tensorflow
Provides-Extra: plotting_deps
Provides-Extra: extension
License-File: LICENSE

|Build| |Documentation| |Stars| |PyPI| |PyPIDownloads|


.. |Build| image:: https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg
    :target: https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg
    :alt: Github Workflow Build sfaira Status

.. |Documentation| image:: https://readthedocs.org/projects/sfaira/badge/?version=latest
    :target: https://sfaira.readthedocs.io/en/latest/
    :alt: Documentation Status

.. |Stars| image:: https://img.shields.io/github/stars/theislab/sfaira?logo=GitHub&color=yellow
   :target: https://github.com/theislab/sfaira/stargazers
   :alt: Github Stars

.. |PyPI| image:: https://img.shields.io/pypi/v/sfaira?logo=PyPI
   :target: https://pypi.org/project/sfaira
   :alt: PyPI Version

.. |PyPIDownloads| image:: https://pepy.tech/badge/sfaira
   :target: https://pepy.tech/project/sfaira
   :alt: Number of downloads


sfaira - data and model repository for single-cell data
=======================================================

.. image:: https://github.com/theislab/sfaira/blob/main/resources/images/concept.png
   :width: 400px
   :align: center

sfaira_ is a model and a data repository in a single python package (`full paper`_).
We provide an interactive overview of the current state of the zoos on sfaira-portal_.

Its data zoo gives users access to streamlined data loaders that allow reproducible use of published and private data sets for model training and exploration.
Its model zoo gives user streamlined access to pre-trained models and to common model architectures to ease usage of neural networks in common single-cell analysis workflows:
A model zoo is a software infrastructure that improves user access to pre-trained models which are separately published, such as DCA_ or scArches_:
Instead of focussing on developing new models, we focus on making models easily accessible to users and distributable by developers.
sfaira integrates into scanpy_ workflows.

.. _scanpy: https://github.com/theislab/scanpy
.. _sfaira: https://sfaira.readthedocs.io
.. _full paper: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02452-6
.. _DCA: https://github.com/theislab/dca
.. _scArches: https://github.com/theislab/scarches
.. _sfaira-portal: https://theislab.github.io/sfaira-portal/


