Metadata-Version: 2.1
Name: sequence-qc
Version: 0.1.14
Summary: Package for doing various ad-hoc quality control steps from MSK-ACCESS generated FASTQ or BAM files
Home-page: https://github.com/msk-access/sequence_qc
Author: Ian Johnson
Author-email: ionox0@gmail.com
License: Apache Software License 2.0
Keywords: sequence_qc
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.5
Requires-Dist: pysam (==0.15.4)
Requires-Dist: pybedtools (==0.8.1)
Requires-Dist: pyfaidx (==0.5.8)
Requires-Dist: pytest (==5.4.2)
Requires-Dist: click (==7.1.2)
Requires-Dist: pysamstats (==1.1.2)
Requires-Dist: pandas (==1.0.3)

# sequence\_qc

Package for doing various ad-hoc quality control steps from MSK-ACCESS generated FASTQ or BAM files

[![Build Status](https://travis-ci.com/msk-access/sequence_qc.svg?branch=master)](https://travis-ci.com/msk-access/sequence_qc) [![PyPi](https://img.shields.io/pypi/v/sequence_qc.svg?)](https://pypi.python.org/pypi/sequence_qc) [![Anaconda](https://anaconda.org/ionox0/sequence-qc/badges/version.svg)](https://anaconda.org/ionox0/sequence-qc/)

* Free software: Apache Software License 2.0
* Documentation: [https://msk-access.gitbook.io/sequence-qc/](https://msk-access.gitbook.io/sequence-qc/)

## Installation

From pypi:

`pip install sequence_qc`

From conda:

`conda install -c ionox0 -c conda-forge -c bioconda sequence-qc`



