Metadata-Version: 2.2
Name: seqnado
Version: 0.6.2
Summary: Pipelines for genomics analysis
Author-email: Alastair Smith <alastair.smith@ndcls.ox.ac.uk>, Catherine Chahrour <catherine.chahrour@msdtc.ox.ac.uk>
License: GNU GENERAL PUBLIC LICENSE Version 3
Project-URL: Homepage, https://github.com/alsmith151/seqnado
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: click
Requires-Dist: cookiecutter
Requires-Dist: pandas
Requires-Dist: pandera
Requires-Dist: pulp<=2.9.0
Requires-Dist: pydantic
Requires-Dist: pyranges
Requires-Dist: pyyaml
Requires-Dist: seaborn
Requires-Dist: setuptools_scm
Requires-Dist: snakemake-wrapper-utils
Requires-Dist: snakemake<9,>8
Requires-Dist: snakemake-executor-plugin-slurm
Requires-Dist: tracknado
Requires-Dist: wget


![SeqNado logo](https://raw.githubusercontent.com/alsmith151/SeqNado/master/seqnado_logo.jpeg)
# SeqNado Pipeline

Pipeline based on snakemake to process ChIP-seq, ATAC-seq, RNA-seq and short read WGS data for SNP calling.

See the SeqNado documentation https://alsmith151.github.io/SeqNado/ for more information. 
