Metadata-Version: 2.1
Name: seminal-root-angle
Version: 0.0.8
Summary: Extract seminal root angle from rhizobox images
Home-page: https://github.com/Abe404/seminal_root_angle
Author: Abraham George Smith
Author-email: abe@abesmith.co.uk
License: GPLv3
Download-URL: https://github.com/Abe404/seminal_root_angle/archive/refs/tags/0.0.8.tar.gz
Description: 
        # Seminal root angle extraction
        
        Used for high-throughput phenotyping of rhizobox images.
        
        ### Install
        
        The latest version is available via PyPI (https://pypi.org/project/seminal-root-angle) for convenient installation with pip
        
        > pip install seminal-root-angle
        
        ### Example usage
        
        Assuming the following folder structure:
        
            output
            data
            ├── photos
            │   ├── photo1.JPG
            │   ├── photo2.JPG
            │   └── ....
            ├── root_segmentations
            │   ├── photo1.png
            │   ├── photo2.png
            │   └── ....
            └── seed_segmentations
                ├── photo1.png
                └── photo2.png
                └── ....
        
        Then the angles can be extracted to the output/angles.csv with the following python code:
        
        ```python
        from seminal_root_angle.extract import extract_all_angles
        extract_all_angles(root_seg_dir='data/root_segmentations',
                           im_dataset_dir='data/photos',
                           seed_seg_dir='data/seed_segmentations',
                           max_seed_points_per_im=2,
                           debug_image_dir='output/debug_images',
                           output_csv_path='output/angles.csv',
                           error_csv_path='output/errors.csv')
        ```
        
Keywords: ROOT,ANGLE,PHENOTYPING
Platform: UNKNOWN
Classifier: Intended Audience :: Developers
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
