LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
selene_sdk/__init__.py
selene_sdk/__main__.py
selene_sdk/cli.py
selene_sdk/evaluate_methylation_model.py
selene_sdk/evaluate_model.py
selene_sdk/train_methylation_bin_leg.kldivloss.py
selene_sdk/train_methylation_bin_leg.py
selene_sdk/train_methylation_bin_only.py
selene_sdk/train_methylation_binary.py
selene_sdk/train_methylation_binary_only.py
selene_sdk/train_methylation_interact.py
selene_sdk/train_methylation_only.py
selene_sdk/train_methylation_spearman.py
selene_sdk/train_methylation_unet.py
selene_sdk/train_model.py
selene_sdk/version.py
selene_sdk.egg-info/PKG-INFO
selene_sdk.egg-info/SOURCES.txt
selene_sdk.egg-info/dependency_links.txt
selene_sdk.egg-info/entry_points.txt
selene_sdk.egg-info/requires.txt
selene_sdk.egg-info/top_level.txt
selene_sdk/interpret/__init__.py
selene_sdk/interpret/ism_result.py
selene_sdk/interpret/vis.py
selene_sdk/interpret/data/gencode_v28_hg19/protein_coding_l12_genes.bed
selene_sdk/interpret/data/gencode_v28_hg19/protein_coding_l12_genes.bed.gz
selene_sdk/interpret/data/gencode_v28_hg19/protein_coding_l12_genes.bed.gz.tbi
selene_sdk/interpret/data/gencode_v28_hg38/protein_coding_l12_genes.bed
selene_sdk/interpret/data/gencode_v28_hg38/protein_coding_l12_genes.bed.gz
selene_sdk/interpret/data/gencode_v28_hg38/protein_coding_l12_genes.bed.gz.tbi
selene_sdk/predict/__init__.py
selene_sdk/predict/_common.py
selene_sdk/predict/_in_silico_mutagenesis.py
selene_sdk/predict/_variant_effect_prediction.py
selene_sdk/predict/model_predict.py
selene_sdk/predict/predict_handlers/__init__.py
selene_sdk/predict/predict_handlers/absolute_diff_score_handler.py
selene_sdk/predict/predict_handlers/diff_score_handler.py
selene_sdk/predict/predict_handlers/handler.py
selene_sdk/predict/predict_handlers/logit_score_handler.py
selene_sdk/predict/predict_handlers/write_predictions_handler.py
selene_sdk/predict/predict_handlers/write_ref_alt_handler.py
selene_sdk/samplers/__init__.py
selene_sdk/samplers/dataloader.py
selene_sdk/samplers/intervals_sampler.py
selene_sdk/samplers/methylation_data_sampler.coords.py
selene_sdk/samplers/methylation_data_sampler_lt.py
selene_sdk/samplers/multi_sampler.pos.py
selene_sdk/samplers/multi_sampler.py
selene_sdk/samplers/multi_sampler_train.py
selene_sdk/samplers/online_sampler.py
selene_sdk/samplers/random_positions_sampler.py
selene_sdk/samplers/sampler.py
selene_sdk/samplers/wrap_dataloader.py
selene_sdk/samplers/file_samplers/__init__.py
selene_sdk/samplers/file_samplers/bed_file_sampler.py
selene_sdk/samplers/file_samplers/file_sampler.py
selene_sdk/samplers/file_samplers/mat_file_sampler.py
selene_sdk/sequences/__init__.py
selene_sdk/sequences/_sequence.c
selene_sdk/sequences/_sequence.pyx
selene_sdk/sequences/genome.py
selene_sdk/sequences/proteome.py
selene_sdk/sequences/sequence.py
selene_sdk/sequences/data/hg19_blacklist_ENCFF001TDO.bed.gz
selene_sdk/sequences/data/hg19_blacklist_ENCFF001TDO.bed.gz.tbi
selene_sdk/sequences/data/hg38.blacklist.bed.gz
selene_sdk/sequences/data/hg38.blacklist.bed.gz.tbi
selene_sdk/targets/__init__.py
selene_sdk/targets/_genomic_features.c
selene_sdk/targets/_genomic_features.pyx
selene_sdk/targets/genomic_features.py
selene_sdk/targets/genomic_features_h5.py
selene_sdk/targets/target.py
selene_sdk/utils/__init__.py
selene_sdk/utils/config.py
selene_sdk/utils/config_utils.py
selene_sdk/utils/example_model.py
selene_sdk/utils/multi_model_wrapper.py
selene_sdk/utils/non_strand_specific_module.py
selene_sdk/utils/performance_metrics.py
selene_sdk/utils/utils.py