NEWS
README
TODO
ez_setup.py
install.py
install.tmpl
setup.cfg
setup.py
doc/Makefile
doc/conf.py
doc/gethelp.py
doc/index.rst
doc/make.bat
doc/segway.rst
segway/__init__.py
segway/_configparser.py
segway/_util.py
segway/bed.py
segway/calc_distance.py
segway/gtf2bed.py
segway/h5histogram.py
segway/h5values.py
segway/layer.py
segway/run.py
segway/task.py
segway.egg-info/PKG-INFO
segway.egg-info/SOURCES.txt
segway.egg-info/dependency_links.txt
segway.egg-info/entry_points.txt
segway.egg-info/not-zip-safe
segway.egg-info/requires.txt
segway.egg-info/top_level.txt
segway/cluster/__init__.py
segway/cluster/common.py
segway/cluster/lsf.py
segway/cluster/sge.py
segway/cluster/sge_setup.py
segway/data/__init__.py
segway/data/dinucleotide.tmpl
segway/data/dont_train.list
segway/data/input.master.tmpl
segway/data/map_frameIndex_ruler.dt.txt
segway/data/map_parent.dt.txt
segway/data/map_segTransition_ruler_seg_segCountDown_segCountDown.dt.tmpl
segway/data/map_seg_segCountDown.dt.tmpl
segway/data/map_seg_subseg_obs.dt.txt
segway/data/map_supervisionLabel_seg_alwaysTrue_semisupervised.dt.txt
segway/data/observation.tmpl
segway/data/output.master
segway/data/seg_table.tab
segway/data/segway-wrapper.sh
segway/data/segway.inc.tmpl
segway/data/segway.str.tmpl
segway/data/supervision.tmpl
test/test.sh
test/data/seg_table_min_100.tab
test/data/test.genomedata
test/data/identifydir/segway.bed.gz
test/data/identifydir/auxiliary/segway.inc
test/data/identifydir/log/details.sh
test/data/identifydir/log/jobs.tab
test/data/identifydir/log/jt_info.txt
test/data/identifydir/log/run.sh
test/data/identifydir/log/segway.sh
test/data/identifydir/observations/float32.list
test/data/identifydir/observations/int.list
test/data/identifydir/observations/observations.tab
test/data/identifydir/output/e/identify/vit0.identifydir.9d9028be5cac11e0b5e70019b9e1892e
test/data/identifydir/output/o/identify/vit0.identifydir.9d9028be5cac11e0b5e70019b9e1892e
test/data/identifydir/triangulation/segway.str.4.1.posterior.trifile
test/data/identifydir/triangulation/segway.str.4.1.trifile
test/data/identifydir/viterbi/viterbi0.bed
test/data/traindir/segway.layered.bed.gz
test/data/traindir/segway.str
test/data/traindir/train.tab
test/data/traindir/accumulators/acc.0.0.bin
test/data/traindir/auxiliary/dont_train.list
test/data/traindir/auxiliary/segway.inc
test/data/traindir/likelihood/likelihood.ll
test/data/traindir/log/details.sh
test/data/traindir/log/jobs.tab
test/data/traindir/log/jt_info.txt
test/data/traindir/log/likelihood.tab
test/data/traindir/log/run.sh
test/data/traindir/log/segway.sh
test/data/traindir/observations/chr21.0000.float32
test/data/traindir/observations/chr21.0000.int
test/data/traindir/observations/float32.list
test/data/traindir/observations/int.list
test/data/traindir/observations/observations.tab
test/data/traindir/output/e/0/emt0.0.0.traindir.9d5a5f2a5c1d11e0a54e0019b9e1892e
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test/data/traindir/output/e/0/emt0.1.bundle.traindir.9d5a5f2a5c1d11e0a54e0019b9e1892e
test/data/traindir/output/e/0/emt0.10.0.traindir.9d5a5f2a5c1d11e0a54e0019b9e1892e
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