typer
scanpy
spatialdata>=0.7.2
joblib
geopandas
igraph
rtree
rasterio
squidpy>=1.6.2
tqdm
anndata>=0.12
ovrlpy>=1.1.0
setuptools<82.0.0

[docs]
sphinx
sphinx-book-theme
myst-parser
nbsphinx
sphinx-autodoc-typehints
sphinx-copybutton
pandoc
pygments
ipython

[test]
coverage
pytest
ruff
ty
ipdb
black[jupyter]
pytest-cov
