.hgignore
COPYING
INSTALL
LICENSE
NEWS
README.rst
TODO
ez_setup.py
install.py
install.tmpl
setup.cfg
setup.py
R/README
R/build.sh
R/segtools/DESCRIPTION
R/segtools/NAMESPACE
R/segtools/R
R/segtools/Read-and-delete-me
R/segtools/man/segtools-package.Rd
doc/Makefile
doc/conf.py
doc/flowchart.png
doc/gethelp.py
doc/index.rst
doc/make.bat
doc/segtools.rst
segtools/__init__.py
segtools/aggregation.py
segtools/bed.py
segtools/common.py
segtools/compare.py
segtools/feature_distance.py
segtools/flatten.py
segtools/gff.py
segtools/gmtk_parameters.py
segtools/html.py
segtools/length_distribution.py
segtools/mnemonics.py
segtools/nucleotide_frequency.py
segtools/overlap.py
segtools/preprocess.py
segtools/relabel.py
segtools/signal_distribution.py
segtools/transition.py
segtools/version.py
segtools.egg-info/PKG-INFO
segtools.egg-info/SOURCES.txt
segtools.egg-info/dependency_links.txt
segtools.egg-info/entry_points.txt
segtools.egg-info/not-zip-safe
segtools.egg-info/requires.txt
segtools.egg-info/top_level.txt
segtools/R/__init__.py
segtools/R/aggregation.R
segtools/R/common.R
segtools/R/dinucleotide.R
segtools/R/distance.R
segtools/R/length.R
segtools/R/overlap.R
segtools/R/signal.R
segtools/R/track_statistics.R
segtools/R/transition.R
segtools/resources/__init__.py
segtools/resources/aggregation_div.tmpl
segtools/resources/aggregation_gene_div.tmpl
segtools/resources/distance_div.tmpl
segtools/resources/gmtk_div.tmpl
segtools/resources/html_footer.tmpl
segtools/resources/html_header.tmpl
segtools/resources/length_div.tmpl
segtools/resources/mnemonic_div.tmpl
segtools/resources/nucleotide_div.tmpl
segtools/resources/overlap_div.tmpl
segtools/resources/signal_div.tmpl
segtools/resources/transition_div.tmpl
test/run_all.py
test/test_bed_compare.py
test/test_feature_distance.py
test/test_overlap.py