.gitignore
.travis.yml
CHANGELOG.md
CONTRIBUTING.md
LICENSE
README.md
methods_mol_bio_seekr-v20.pdf
setup.py
seekr/__init__.py
seekr/__version__.py
seekr/console_scripts.py
seekr/fasta.py
seekr/fasta_reader.py
seekr/graph.py
seekr/kmer_counts.py
seekr/my_tqdm.py
seekr/pearson.py
seekr/pwm.py
seekr/utils.py
seekr.egg-info/PKG-INFO
seekr.egg-info/SOURCES.txt
seekr.egg-info/dependency_links.txt
seekr.egg-info/entry_points.txt
seekr.egg-info/not-zip-safe
seekr.egg-info/requires.txt
seekr.egg-info/top_level.txt
seekr/tests/integration.sh
seekr/tests/test_console_scripts.py
seekr/tests/test_fasta.py
seekr/tests/test_fasta_reader.py
seekr/tests/test_graph.py
seekr/tests/test_kmer_counts.py
seekr/tests/test_my_tqdm.py
seekr/tests/test_pearson.py
seekr/tests/test_pwm.py
seekr/tests/test_utils.py
seekr/tests/data/example.fa
seekr/tests/data/example2.fa
seekr/tests/data/example_2mers.csv
seekr/tests/data/example_2mers.npy
seekr/tests/data/example_2mers_count.npy
seekr/tests/data/example_2mers_counts.npy
seekr/tests/data/example_3mers_raw.csv
seekr/tests/data/example_mean.npy
seekr/tests/data/example_std.npy
seekr/tests/data/v22_pc_head.fa
seekr/tests/data/pwms/M001_0.6.txt