# Copyright (C) 2011-2012 CRS4.
#
# This file is part of Seal.
#
# Seal is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Seal is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with Seal.  If not, see <http://www.gnu.org/licenses/>.

BWA_TYPE_NO_MATCH = 0
BWA_TYPE_UNIQUE = 1
BWA_TYPE_REPEAT = 2
BWA_TYPE_MATESW = 3

BWA_MODE_GAPE = 0x01
BWA_MODE_COMPREAD = 0x02
BWA_MODE_LOGGAP = 0x04
BWA_MODE_NONSTOP = 0x10

CIGAR_OP_SHIFT = 14
CIGAR_LN_MASK = 0x3fff
