Metadata-Version: 1.1
Name: scvi
Version: 0.1.0
Summary: Single-cell Variational Inference
Home-page: https://github.com/romain-lopez/scvi
Author: Romain Lopez, Jeffrey Regier, Maxime Langevin, Edouard Mehlman, Yining Liu
Author-email: romain_lopez@berkeley.edu
License: MIT license
Description: ====
        scVI
        ====
        
        .. image:: https://travis-ci.org/YosefLab/scVI.svg?branch=master
            :target: https://travis-ci.org/YosefLab/scVI
        
        .. image:: https://codecov.io/gh/YosefLab/scVI/branch/master/graph/badge.svg
          :target: https://codecov.io/gh/YosefLab/scVI
        
        .. image:: https://readthedocs.org/projects/scvi/badge/?version=latest
                :target: https://scvi.readthedocs.io/en/latest/?badge=latest
                :alt: Documentation Status
        
        
        Single-cell Variational Inference
        
        
        * Free software: MIT license
        * Documentation: https://scvi.readthedocs.io.
        
        
        Installation
        --------
        
        1. Install PyTorch: http://pytorch.org
        
        2. Install this repository from source: ``git clone https://github.com/YosefLab/scVI.git``
        
        3. Refer to the examples_ subdirectory for Jupyter notebooks that illustrate usage. 
        
        .. _examples: https://github.com/YosefLab/scVI/tree/master/examples
        
        Benchmarks
        --------
        
        To recreate the results appearing in the paper referenced below, run
        
        .. code-block::
        
            python ./run_benchmarks.py --dataset=cortex 
        
        References
        --------
        
        Romain Lopez, Jeffrey Regier, Michael B Cole, Michael Jordan, Nir Yosef.
        **"Bayesian Inference for a Generative Model of Transcriptome Profiles from Single-cell RNA Sequencing."**
        In submission. Preprint available at https://www.biorxiv.org/content/early/2018/03/30/292037
        
        
        =======
        History
        =======
        
        0.1.0 (2018-06-12)
        ------------------
        
        * First release on PyPI.
        
Keywords: scvi
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
