.flake8
.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CONTRIBUTING.rst
LICENSE
README.rst
pypi.rst
pyproject.toml
pytest.ini
requirements-dev.txt
requirements.txt
setup.py
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/enhancement_request.md
.github/workflows/ci.yml
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/about.rst
docs/source/api.rst
docs/source/conf.py
docs/source/getting_started.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/references.rst
docs/source/release_notes.rst
docs/source/_ext/edit_on_github.py
docs/source/_static/colab-badge.svg
docs/source/_static/custom.css
docs/source/_static/nbviewer-badge.svg
docs/source/_templates/autosummary/base.rst
docs/source/_templates/autosummary/class.rst
docs/source/perspectives/index.rst
docs/source/vignettes/index.rst
scvelo/__init__.py
scvelo/datasets.py
scvelo/logging.py
scvelo/pl.py
scvelo/pp.py
scvelo/read_load.py
scvelo/settings.py
scvelo/tl.py
scvelo/utils.py
scvelo.egg-info/PKG-INFO
scvelo.egg-info/SOURCES.txt
scvelo.egg-info/dependency_links.txt
scvelo.egg-info/requires.txt
scvelo.egg-info/top_level.txt
scvelo/core/__init__.py
scvelo/core/_anndata.py
scvelo/core/_arithmetic.py
scvelo/core/_base.py
scvelo/core/_linear_models.py
scvelo/core/_metrics.py
scvelo/core/_models.py
scvelo/core/_parallelize.py
scvelo/core/tests/__init__.py
scvelo/core/tests/test_anndata.py
scvelo/core/tests/test_arithmetic.py
scvelo/core/tests/test_base.py
scvelo/core/tests/test_linear_models.py
scvelo/core/tests/test_metrics.py
scvelo/core/tests/test_models.py
scvelo/plotting/__init__.py
scvelo/plotting/docs.py
scvelo/plotting/gridspec.py
scvelo/plotting/heatmap.py
scvelo/plotting/paga.py
scvelo/plotting/palettes.py
scvelo/plotting/proportions.py
scvelo/plotting/pseudotime.py
scvelo/plotting/scatter.py
scvelo/plotting/simulation.py
scvelo/plotting/summary.py
scvelo/plotting/utils.py
scvelo/plotting/velocity.py
scvelo/plotting/velocity_embedding.py
scvelo/plotting/velocity_embedding_grid.py
scvelo/plotting/velocity_embedding_stream.py
scvelo/plotting/velocity_graph.py
scvelo/preprocessing/__init__.py
scvelo/preprocessing/moments.py
scvelo/preprocessing/neighbors.py
scvelo/preprocessing/utils.py
scvelo/tools/__init__.py
scvelo/tools/_velocity_graph.py
scvelo/tools/dynamical_model.py
scvelo/tools/dynamical_model_utils.py
scvelo/tools/multi_kinetics_model.py
scvelo/tools/optimization.py
scvelo/tools/paga.py
scvelo/tools/rank_velocity_genes.py
scvelo/tools/run.py
scvelo/tools/score_genes_cell_cycle.py
scvelo/tools/terminal_states.py
scvelo/tools/transition_matrix.py
scvelo/tools/utils.py
scvelo/tools/velocity.py
scvelo/tools/velocity_confidence.py
scvelo/tools/velocity_embedding.py
scvelo/tools/velocity_graph.py
scvelo/tools/velocity_pseudotime.py
tests/test_basic.py