anndata>=0.7.5
scanpy>=1.5
loompy>=2.0.12
umap-learn<0.5,>=0.3.10
numpy>=1.17
scipy>=1.4.1
pandas>=0.23
scikit-learn>=0.21.2
matplotlib>=3.1.2

[dev]
black==20.8b1
pre-commit==2.5.1

[docs]
scanpy
setuptools
setuptools_scm
typing_extensions
importlib_metadata
sphinx_rtd_theme>=0.3
sphinx_autodoc_typehints<=1.6
ipykernel
sphinx>=1.7
nbsphinx>=0.7

[hnswlib]
pybind11
hnswlib

[louvain]
python-igraph
louvain
