recommonmark
h5py>=3.9.0
idna>=3.4
igraph>=0.10.7
igraph<=0.11
networkx>=3.1
numba>=0.57.1
numpy>=1.24.4
pandas>=2.1.0
parso>=0.8.3
pillow>=9.4.0
pip>=23.2.1
psutil>=5.9.5
ptyprocess>=0.7.0
pure_eval>=0.2.2
pycparser>=2.21
pygments>=2.16.1
pynndescent>=0.5.10
pyopenssl>=23.2.0
pyparsing>=3.1.1
pysocks>=1.7.1
python-dateutil>=2.8.2
python-igraph>=0.10.8
pytz>=2023.3.post1
pyzmq>=25.1.1
lightning==2.0.8
numpyro==0.13.0
requests>=2.31.0
scanpy>=1.9.5
scikit-learn>=1.3.0
scipy>=1.9.3
seaborn>=0.12.2
setuptools>=68.0.0
six>=1.16.0
stack_data>=0.6.2
statsmodels>=0.14.0
stdlib-list>=0.8.0
sympy>=1.11.1
tbb>=2021.8.0
texttable>=1.6.7
threadpoolctl>=3.2.0
torchaudio>=2.0.0
torchvision>=0.15.0
tornado>=6.3.3
tqdm>=4.66.1
traitlets>=5.9.0
typing_extensions>=4.7.1
tzdata>=2023c
umap-learn>=0.5.3
wcwidth>=0.2.6
wheel>=0.38.4
pyro-ppl>=1.8.6
scvi-tools>=1.0.3
leidenalg>=0.10.1

[doc]
sphinx<4
sphinx-autodoc-typehints<1.12
sphinx-copybutton
nbsphinx
sphinx-rtd-theme
ipython
jinja2<3.1
prompt-toolkit<3.0.0
myst-nb
myst-parser
recommonmark
