LICENSE
README.md
pyproject.toml
src/scTimeBench/config.py
src/scTimeBench/database.py
src/scTimeBench/main.py
src/scTimeBench.egg-info/PKG-INFO
src/scTimeBench.egg-info/SOURCES.txt
src/scTimeBench.egg-info/dependency_links.txt
src/scTimeBench.egg-info/entry_points.txt
src/scTimeBench.egg-info/requires.txt
src/scTimeBench.egg-info/top_level.txt
src/scTimeBench/method_utils/__init__.py
src/scTimeBench/method_utils/method_runner.py
src/scTimeBench/method_utils/ot_method_runner.py
src/scTimeBench/metrics/__init__.py
src/scTimeBench/metrics/base.py
src/scTimeBench/metrics/method_manager.py
src/scTimeBench/metrics/embeddings/__init__.py
src/scTimeBench/metrics/embeddings/base.py
src/scTimeBench/metrics/embeddings/aggregate/__init__.py
src/scTimeBench/metrics/embeddings/aggregate/ari.py
src/scTimeBench/metrics/embeddings/aggregate/base.py
src/scTimeBench/metrics/embeddings/trajectory/__init__.py
src/scTimeBench/metrics/embeddings/trajectory/base.py
src/scTimeBench/metrics/gex_prediction/__init__.py
src/scTimeBench/metrics/gex_prediction/base.py
src/scTimeBench/metrics/gex_prediction/ot_eval/__init__.py
src/scTimeBench/metrics/gex_prediction/ot_eval/base.py
src/scTimeBench/metrics/gex_prediction/ot_eval/energy.py
src/scTimeBench/metrics/gex_prediction/ot_eval/hausdorff.py
src/scTimeBench/metrics/gex_prediction/ot_eval/mmd.py
src/scTimeBench/metrics/gex_prediction/ot_eval/wass.py
src/scTimeBench/metrics/ontology_based/__init__.py
src/scTimeBench/metrics/ontology_based/base.py
src/scTimeBench/metrics/ontology_based/graph_sim/__init__.py
src/scTimeBench/metrics/ontology_based/graph_sim/average_shortest_path_diff.py
src/scTimeBench/metrics/ontology_based/graph_sim/base.py
src/scTimeBench/metrics/ontology_based/graph_sim/confusion_matrix.py
src/scTimeBench/metrics/ontology_based/graph_sim/ged.py
src/scTimeBench/metrics/ontology_based/graph_sim/graph_viz.py
src/scTimeBench/metrics/ontology_based/graph_sim/jaccard_similarity.py
src/scTimeBench/metrics/ontology_based/graph_sim/utils.py
src/scTimeBench/shared/__init__.py
src/scTimeBench/shared/constants.py
src/scTimeBench/shared/helpers.py
src/scTimeBench/shared/utils.py
src/scTimeBench/shared/dataset/__init__.py
src/scTimeBench/shared/dataset/base.py
src/scTimeBench/shared/dataset/preprocessors/__init__.py
src/scTimeBench/shared/dataset/preprocessors/copy_train_test.py
src/scTimeBench/shared/dataset/preprocessors/lineage.py
src/scTimeBench/shared/dataset/preprocessors/log_norm.py
src/scTimeBench/shared/dataset/preprocessors/percentile_split.py
src/scTimeBench/shared/dataset/preprocessors/pseudotime.py
src/scTimeBench/shared/dataset/preprocessors/round_cells_to_timepoint.py
src/scTimeBench/shared/dataset/preprocessors/test_timepoint_selection.py
src/scTimeBench/shared/dataset/registry/__init__.py
src/scTimeBench/shared/dataset/registry/drosophila.py
src/scTimeBench/shared/dataset/registry/dummy.py
src/scTimeBench/shared/dataset/registry/garcia_alonso.py
src/scTimeBench/shared/dataset/registry/ma.py
src/scTimeBench/shared/dataset/registry/maolaniru.py
src/scTimeBench/shared/dataset/registry/mef.py
src/scTimeBench/shared/dataset/registry/olaniru.py
src/scTimeBench/shared/dataset/registry/suo.py
src/scTimeBench/shared/dataset/registry/zebrafish.py
src/scTimeBench/trajectory_infer/__init__.py
src/scTimeBench/trajectory_infer/base.py
src/scTimeBench/trajectory_infer/classifier.py
src/scTimeBench/trajectory_infer/kNN.py
src/scTimeBench/trajectory_infer/ot.py
test/test_suite_helpers.py