"""Core functionality for scPPIN."""

from .bum_model import fit_bum, bum_density, bum_density_cumulative
from .scoring import compute_node_scores, node_score_function
from .pcst_solver import solve_pcst, prepare_edge_costs
from .network_utils import (
    load_ppin,
    filter_network,
    filter_network_by_pvalues,
    simplify_network,
    validate_network,
    network_statistics
)
from .edge_weights import normalize_edge_weights

__all__ = [
    'fit_bum',
    'bum_density',
    'bum_density_cumulative',
    'compute_node_scores',
    'node_score_function',
    'solve_pcst',
    'prepare_edge_costs',
    'load_ppin',
    'filter_network',
    'filter_network_by_pvalues',
    'simplify_network',
    'validate_network',
    'network_statistics',
    'normalize_edge_weights',
]

