tqdm
numpy<2.0.0
pandas
numba
matplotlib
seaborn
h5py
yattag
alphabase

zarr
ome-zarr
tifffile
aicspylibczi

mahotas
shapely
rasterio
imagesize
imagecodecs
xarray>=2024.10.0
opencv-python
scikit-image>=0.22.0
scikit-fmm
scipy
cellpose>=3.1.1

torch
pytorch-lightning
torchvision

spatialdata>=0.3.0
napari-spatialdata
pyqt5
lxml_html_clean
ashlar>=1.19.0
networkx
py-lmd>=1.3.1

#packages for building the documentation
sphinx
sphinx-argparse
sphinx-rtd-theme==2.0.0
nbsphinx
nbsphinx-link
sphinx-book-theme
sphinx-design
sphinx-copybutton
sphinx-gallery

#for testing
pytest
# development
pre-commit
