anndata
apted
biopython
click
cython
cyvcf2
ete3
graphviz
ipython
joblib
matplotlib
natsort
networkx
numba
numpy
pandas
pybnb
pydot<2.0.0
python_sat
pyyaml
scikit_learn
scipy
setuptools
seaborn
termcolor
tqdm

[dev]
pre-commit
pytest-cov
pytest-xdist
bumpversion

[docs]
furo
ipython
memory_profiler
nbsphinx
nbsphinx-link
pydata_sphinx_theme
pyenchant
pypandoc
sphinx<6
sphinx-autodoc-typehints
sphinx-click
sphinx-paramlinks
sphinx_copybutton
sphinx_gallery
sphinx_rtd_theme
sphinxcontrib-bibtex
typing_extensions
