CHANGELOG.md
LICENSE
MANIFEST.in
README.md
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
scout/__init__.py
scout/__version__.py
scout/adapter/__init__.py
scout/adapter/client.py
scout/adapter/utils.py
scout/adapter/mongo/__init__.py
scout/adapter/mongo/acmg.py
scout/adapter/mongo/base.py
scout/adapter/mongo/case.py
scout/adapter/mongo/case_events.py
scout/adapter/mongo/case_group.py
scout/adapter/mongo/clinvar.py
scout/adapter/mongo/cytoband.py
scout/adapter/mongo/event.py
scout/adapter/mongo/filter.py
scout/adapter/mongo/hgnc.py
scout/adapter/mongo/hpo.py
scout/adapter/mongo/index.py
scout/adapter/mongo/institute.py
scout/adapter/mongo/managed_variant.py
scout/adapter/mongo/matchmaker.py
scout/adapter/mongo/omim.py
scout/adapter/mongo/panel.py
scout/adapter/mongo/phenomodel.py
scout/adapter/mongo/query.py
scout/adapter/mongo/transcript.py
scout/adapter/mongo/user.py
scout/adapter/mongo/variant.py
scout/adapter/mongo/variant_events.py
scout/adapter/mongo/variant_loader.py
scout/build/__init__.py
scout/build/acmg.py
scout/build/case.py
scout/build/disease.py
scout/build/hpo.py
scout/build/individual.py
scout/build/institute.py
scout/build/managed_variant.py
scout/build/panel.py
scout/build/phenotype.py
scout/build/user.py
scout/build/genes/__init__.py
scout/build/genes/exon.py
scout/build/genes/hgnc_gene.py
scout/build/genes/transcript.py
scout/build/variant/__init__.py
scout/build/variant/clnsig.py
scout/build/variant/compound.py
scout/build/variant/gene.py
scout/build/variant/genotype.py
scout/build/variant/transcript.py
scout/build/variant/variant.py
scout/commands/__init__.py
scout/commands/base.py
scout/commands/convert.py
scout/commands/index_command.py
scout/commands/serve.py
scout/commands/utils.py
scout/commands/wipe_database.py
scout/commands/delete/__init__.py
scout/commands/delete/delete_command.py
scout/commands/download/__init__.py
scout/commands/download/download_command.py
scout/commands/download/ensembl.py
scout/commands/download/everything.py
scout/commands/download/exac.py
scout/commands/download/hgnc.py
scout/commands/download/hpo.py
scout/commands/download/omim.py
scout/commands/export/__init__.py
scout/commands/export/case.py
scout/commands/export/database.py
scout/commands/export/exon.py
scout/commands/export/export_command.py
scout/commands/export/export_handler.py
scout/commands/export/gene.py
scout/commands/export/hpo.py
scout/commands/export/mitochondrial_report.py
scout/commands/export/panel.py
scout/commands/export/transcript.py
scout/commands/export/utils.py
scout/commands/export/variant.py
scout/commands/load/__init__.py
scout/commands/load/base.py
scout/commands/load/case.py
scout/commands/load/cytoband.py
scout/commands/load/exons.py
scout/commands/load/institute.py
scout/commands/load/panel.py
scout/commands/load/region.py
scout/commands/load/report.py
scout/commands/load/research.py
scout/commands/load/user.py
scout/commands/load/variants.py
scout/commands/setup/__init__.py
scout/commands/setup/setup_scout.py
scout/commands/update/__init__.py
scout/commands/update/base.py
scout/commands/update/case.py
scout/commands/update/compounds.py
scout/commands/update/disease.py
scout/commands/update/genes.py
scout/commands/update/hpo.py
scout/commands/update/individual.py
scout/commands/update/institute.py
scout/commands/update/omim.py
scout/commands/update/panel.py
scout/commands/update/phenotype_groups.py
scout/commands/update/user.py
scout/commands/view/__init__.py
scout/commands/view/aliases.py
scout/commands/view/base.py
scout/commands/view/case.py
scout/commands/view/collections.py
scout/commands/view/diseases.py
scout/commands/view/hgnc.py
scout/commands/view/hpo.py
scout/commands/view/index.py
scout/commands/view/individuals.py
scout/commands/view/institutes.py
scout/commands/view/intervals.py
scout/commands/view/panels.py
scout/commands/view/transcripts.py
scout/commands/view/users.py
scout/constants/__init__.py
scout/constants/acmg.py
scout/constants/case_tags.py
scout/constants/clinvar.py
scout/constants/clnsig.py
scout/constants/file_types.py
scout/constants/gene_tags.py
scout/constants/igv_tracks.py
scout/constants/indexes.py
scout/constants/phenotype.py
scout/constants/query_terms.py
scout/constants/so_terms.py
scout/constants/variant_tags.py
scout/constants/variants_export.py
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scout/demo/643594.clinical.str.annotated.limits.vcf.gz.tbi
scout/demo/643594.clinical.str.annotated.vcf.gz
scout/demo/643594.clinical.str.annotated.vcf.gz.tbi
scout/demo/643594.clinical.str.stranger.vcf.gz
scout/demo/643594.clinical.str.stranger.vcf.gz.tbi
scout/demo/643594.clinical.str.vcf.gz
scout/demo/643594.clinical.str.vcf.gz.tbi
scout/demo/643594.clinical.vcf.gz
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scout/demo/643594.config.yaml
scout/demo/643594.ped
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scout/demo/ADM1059A2.dummy.cgh
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scout/demo/reduced_mt.bam
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scout/exceptions/__init__.py
scout/exceptions/config.py
scout/exceptions/database.py
scout/exceptions/pedigree.py
scout/exceptions/vcf.py
scout/export/__init__.py
scout/export/exon.py
scout/export/gene.py
scout/export/panel.py
scout/export/transcript.py
scout/export/variant.py
scout/load/__init__.py
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scout/load/case.py
scout/load/cytoband.py
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scout/load/hgnc_gene.py
scout/load/hpo.py
scout/load/institute.py
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scout/load/setup.py
scout/load/transcript.py
scout/log/__init__.py
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scout/models/__init__.py
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scout/models/event.py
scout/models/hgnc_map.py
scout/models/institute.py
scout/models/managed_variant.py
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scout/models/phenomodel.py
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scout/parse/clinvar.py
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scout/parse/peddy.py
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scout/parse/variant/clnsig.py
scout/parse/variant/compound.py
scout/parse/variant/conservation.py
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scout/server/config.py
scout/server/links.py
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scout/server/blueprints/__init__.py
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