Metadata-Version: 2.4
Name: scopyon
Version: 1.0.0a5
Summary: Monte Carlo simulation toolkit for bioimaging systems
Home-page: https://github.com/ecell/scopyon
Author: Masaki Watabe
Author-email: masaki@riken.jp
Maintainer: Kazunari Kaizu
Maintainer-email: kaizu@riken.jp
License: BSD-3-Clause
Classifier: Development Status :: 3 - Alpha
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: BSD License
Requires-Python: >=3
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: matplotlib
Requires-Dist: pint
Requires-Dist: pyyaml
Requires-Dist: hmmlearn==0.2.3
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: license
Dynamic: license-file
Dynamic: maintainer
Dynamic: maintainer-email
Dynamic: requires-dist
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Dynamic: summary

scopyon
=======

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:microscope: Monte Carlo simulation toolkit for bioimaging systems

Documentation
--------------

See [https://scopyon.readthedocs.io/](https://scopyon.readthedocs.io/) for details.

Requirements
------------

For `scopyon`, Python 3 and its libraries, `numpy`, `scipy`, `matplotlib`, `pyyaml` and `pint`, are required. Installation of `scikit-image`, `pillow` and `plotly` is also recommended.

Installation
------------

```shell-session
$ pip install scopyon
```

or

```shell-session
$ python setup.py test install
```

Quick start
-----------

```shell-session
$ python examples/twocolor.py
```

![TIRF Image](https://github.com/ecell/scopyon/raw/master/examples/twocolor_000.png)

License
-------

`scopyon` is licensed under the terms of BSD-3-Clause (see [LICENSE](/LICENSE)).

Citation
--------

If this package contributes to your work, please cite the followings.

[https://doi.org/10.1371/journal.pone.0130089](https://doi.org/10.1371/journal.pone.0130089)
