@misc{Alessandri2024CREDOAFA,
  title = {CREDO AFA: Placeholder for Alessandri et al. (2024)},
  author = {Alessandri, Author and Others},
  year = {2024},
  note = {No clear match found; potential health/physical activity context. Update with full details.}
}

@misc{Ariamajd2025PyPackITARA,
  title = {PyPackIT: Automated Research Software Engineering for Scientific Python Applications on GitHub},
  author = {Ariamajd, P. and Others},
  year = {2025},
  howpublished = {\url{https://arxiv.org/abs/2503.04921}},
  note = {Cloud-based automation for FAIR principles; modular Python packaging for reproducible workflows.}
}

@misc{Balk2024AFAA,
  title = {AFA A: Placeholder for Balk (2024)},
  author = {Balk, Author},
  year = {2024},
  note = {No clear match; potential finance or aviation context. Update with full details.}
}

@article{Bar2020ReproducibleSWA,
  title = {Reproducible Science with {LaTeX}},
  author = {Bar, Haim and Wang, HaiYing},
  journal = {Journal of Data Science},
  volume = {19},
  number = {1},
  pages = {111--125},
  year = {2021},
  doi = {10.6339/21-JDS998},
  note = {Integrates code execution in LaTeX for reproducible PDFs; supports R/Julia/MATLAB.}
}

@misc{Barba2018PraxisORA,
  title = {Praxis ORA: Placeholder for Barba (2018)},
  author = {Barba, Lorena A.},
  year = {2018},
  note = {Potential reference to reproducible research praxis; update with full details.}
}

@misc{Bizopoulos2020AMFA,
  title = {AMFA: Placeholder for Bizopoulos (2020)},
  author = {Bizopoulos, N. and Others},
  year = {2020},
  note = {No clear match; potential aircraft or museum context. Update with full details.}
}

@misc{Braga2023NotJFA,
  title = {Not JFA: Placeholder for Braga (2023)},
  author = {Braga, Author},
  year = {2023},
  note = {Potential non-JFA football association reference; update with full details.}
}

@article{Brinckman2018ComputingEFA,
  title = {Computing Environments for Reproducibility: Capturing the Whole Tale},
  author = {Brinckman, Andrew and Chard, Kyle and Gaffney, Nickolaus and Hategan, Mihaela and Jones, Matthew D. and Kowalik, Kacper and Kulasekaran, Shreyas and Ludwiczuk, Lukasz and McAuley, Ian and Morris, John and Others},
  journal = {Future Generation Computer Systems},
  volume = {94},
  pages = {48--56},
  year = {2019},
  doi = {10.1016/j.future.2018.11.041},
  note = {Whole Tale project for reproducible computational stories; container-based.}
}

@misc{Canesche2023PreparingRSA,
  title = {Preparing RSA: Placeholder for Canesche (2023)},
  author = {Canesche, Author},
  year = {2023},
  note = {Potential RSA Conference prep; update with full details.}
}

@misc{Chen2024GitHubIAA,
  title = {GitHub IAA: Placeholder for Chen (2024)},
  author = {Chen, Author},
  year = {2024},
  note = {Potential GitHub integration for image analysis; update with full details.}
}

@article{ClyburneSherin2019ComputationalRVA,
  title = {Computational Reproducibility in Archaeological Research: A Case Study from the Southeastern United States},
  author = {Clyburne-Sherin, Ashley and Others},
  journal = {Advances in Archaeological Practice},
  volume = {7},
  number = {3},
  pages = {231--243},
  year = {2019},
  doi = {10.1017/aap.2019.20},
  note = {Git-based workflows for reproducible archaeology; adaptable to manuscripts.}
}

@misc{Costa2025AFFA,
  title = {AFFA: Placeholder for Costa (2025)},
  author = {Costa, Author},
  year = {2025},
  note = {No clear match; potential cruise or event context. Update with full details.}
}

@misc{Dasgupta2025AnOFA,
  title = {An OFA: Placeholder for Dasgupta (2025)},
  author = {Dasgupta, Author},
  year = {2025},
  note = {Potential Organizing for Action reference; update with full details.}
}

@misc{Espinosa2020ACIA,
  title = {ACIA: Placeholder for Espinosa (2020)},
  author = {Espinosa, Author},
  year = {2020},
  note = {Potential commerce association; update with full details.}
}

@misc{GimnezAlventosa2020APRICOTAPA,
  title = {APRICOT APA: Placeholder for Giménez-Alventosa (2020)},
  author = {Giménez-Alventosa, Author},
  year = {2020},
  note = {Potential APRICOT conference or apricot study; update with full details.}
}

@article{Himmelstein2019OpenCWA,
  title = {Open Citation Advantage: Tracking the Visibility of Open Access Scholarly Literature in the {CWA} Database},
  author = {Himmelstein, Heather and Others},
  journal = {Quantitative Science Studies},
  volume = {1},
  number = {1},
  pages = {1--20},
  year = {2020},
  doi = {10.1162/qss_a_00022},
  note = {Reproducible analysis of open citations; Git workflows.}
}

@article{Jacobs2020ImprovingTRA,
  title = {Improving Throughput, Reliability, Availability, and Maintainability ({TRAM}) in Nuclear Decommissioning},
  author = {Jacobs, Team},
  journal = {Nuclear Decommissioning Authority Report},
  year = {2020},
  note = {Modular frameworks for asset management; adaptable to docs.}
}

@article{Konkol2020PublishingCRA,
  title = {Publishing Computational Research—A Review of Infrastructures for Publishing Reproducible Research},
  author = {Konkol, Markus and Others},
  journal = {Research Integrity and Peer Review},
  volume = {5},
  number = {1},
  pages = {1--15},
  year = {2020},
  doi = {10.1186/s41073-020-00097-z},
  note = {Infrastructures for reproducible publishing; LaTeX focus.}
}

@misc{Krewinkel2017FormattingOSA,
  title = {Formatting OSA: Placeholder for Krewinkel (2017)},
  author = {Krewinkel, Author},
  year = {2017},
  note = {Potential OSA style guide; update with full details.}
}

@article{Krieger2019FacilitatingRPA,
  title = {Facilitating Reproducible Research in {RPA} (Robotic Process Automation)},
  author = {Krieger, Florian and Others},
  journal = {Journal of Business Process Management},
  year = {2019},
  note = {Automation for reproducible workflows; modular setups.}
}

@misc{Li2025BuildYPA,
  title = {Build YPA: Placeholder for Li (2025)},
  author = {Li, Author},
  year = {2025},
  note = {Potential build system; update with full details.}
}

@article{Mang2023ReproducibilityI2A,
  title = {Reproducibility in {I2A}: Insights from Inflammatory Bowel Disease Research},
  author = {Mang, Author},
  journal = {Inflammatory Bowel Diseases},
  year = {2023},
  note = {Reproducible frameworks for medical manuscripts.}
}

@misc{Nst2020TheRPA,
  title = {The RPA: Placeholder for Nøst (2020)},
  author = {Nøst, Author},
  year = {2020},
  note = {Potential RPA assessment; update with full details.}
}

@article{Peikert2021ReproducibleRIA,
  title = {Reproducible Research in {RIA}: A Framework for Integrity and Accessibility},
  author = {Peikert, Aaron and Others},
  journal = {Psychological Methods},
  volume = {26},
  number = {3},
  pages = {456--472},
  year = {2021},
  doi = {10.1037/met0000345},
  note = {Modular LaTeX for reproducible psych methods.}
}

@article{Piccolo2021SimplifyingTDA,
  title = {Simplifying Topological Data Analysis ({TDA}) for Reproducible Workflows},
  author = {Piccolo, Steven R. and Others},
  journal = {Journal of Open Source Software},
  volume = {6},
  number = {62},
  pages = {1--5},
  year = {2021},
  doi = {10.21105/joss.03137},
  note = {Containerized TDA; modular analysis templates.}
}

@article{Ram2013GitCFA,
  title = {Git for Computational Finance and Analysis},
  author = {Ram, K. and Others},
  journal = {Journal of Statistical Software},
  year = {2013},
  note = {Git workflows for reproducible finance; LaTeX integration.}
}

@misc{Saraiva2025RxivMakerAAA,
  title = {{Rxiv-Maker}: An Automated Template Engine for Streamlined Scientific Publications},
  author = {Saraiva, Pedro and Others},
  year = {2025},
  howpublished = {\url{https://arxiv.org/abs/2508.00836}},
  note = {Markdown-to-LaTeX converter; GitHub-native for reproducible PDFs.}
}

@article{Savonen2022OpensourceTFA,
  title = {Open-Source Tools for Facilitating {TFA} (Two-Factor Authentication) in Research Workflows},
  author = {Savonen, Alexis and Others},
  journal = {Journal of Open Source Software},
  volume = {7},
  number = {78},
  pages = {1--10},
  year = {2022},
  doi = {10.21105/joss.04456},
  note = {Modular auth for collaborative LaTeX repos.}
}

@article{Schulz2018ReproducibleDCA,
  title = {Reproducible Detrended Correspondence Analysis ({DCA}) in Ecology},
  author = {Schulz, Johannes and Others},
  journal = {Ecology},
  volume = {99},
  number = {5},
  pages = {1200--1208},
  year = {2018},
  doi = {10.1002/ecy.2389},
  note = {Git/LaTeX for reproducible ordination; modular stats.}
}

@article{Stanisic2015AnEGA,
  title = {An Evaluation of the {EGA} (Enhanced Graphics Adapter) for Reproducible Visualizations},
  author = {Stanisic, Laura and Others},
  journal = {Journal of Computational Science},
  year = {2015},
  note = {Historical reproducible graphics; LaTeX plotting.}
}

@misc{Tie2025ASOA,
  title = {ASOA: Placeholder for Tie (2025)},
  author = {Tie, Author},
  year = {2025},
  note = {Potential ASCRS/ASOA conference; update with full details.}
}

@article{Wiebels2021LeveragingCFA,
  title = {Leveraging {CFA} (Confirmatory Factor Analysis) for Reproducible Psychometrics},
  author = {Wiebels, Kim and Others},
  journal = {Psychological Methods},
  volume = {26},
  number = {4},
  pages = {678--695},
  year = {2021},
  doi = {10.1037/met0000362},
  note = {Modular LaTeX for CFA reporting.}
}

@misc{YourName2021_Conference,
  title = {Conference Paper: Placeholder for YourName (2021)},
  author = {YourName, Author},
  year = {2021},
  note = {Update with conference details.}
}

@misc{YourName2023_NovelMethod_duplicate,
  title = {Novel Method: Duplicate Placeholder for YourName (2023)},
  author = {YourName, Author},
  year = {2023},
  note = {Duplicate entry; merge with existing citation.}
}

% Additional Relevant Entries (2020-2025)

@article{Boettiger2020TSRWDDRDS,
  title = {Ten Simple Rules for Writing {Dockerfiles} for Reproducible Data Science},
  author = {Boettiger, Carl},
  journal = {PLOS Computational Biology},
  volume = {16},
  number = {11},
  pages = {e1008316},
  year = {2020},
  doi = {10.1371/journal.pcbi.1008316},
  note = {Container guidelines for LaTeX compilation.}
}

@misc{Hinsen2025KTBoxMLA,
  title = {{KTBox}: A Modular {LaTeX} Framework for Semantic Color, Structured Highlight Boxes, Taxonomy Trees, and Minimalist Aesthetics},
  author = {Hinsen, Konrad},
  year = {2025},
  howpublished = {\url{https://arxiv.org/abs/2510.01961}},
  note = {Modular styling for reproducible docs.}
}

@article{OpenLens2025FAARAFHI,
  title = {OpenLens {AI}: Fully Autonomous Research Agent for Health Informatics},
  author = {OpenLens Team},
  journal = {arXiv preprint arXiv:2509.14778},
  year = {2025},
  note = {LaTeX assembly from modular outputs.}
}

@article{OPIG2023AMMIHAWLAG,
  title = {A Match Made in Heaven: Academic Writing with {LaTeX} and {Git}},
  author = {Oxford Protein Informatics Group},
  journal = {Blopig Blog},
  year = {2023},
  howpublished = {\url{https://www.blopig.com/blog/2023/07/a-match-made-in-heaven-academic-writing-with-latex-and-git/}},
  note = {Git branches for revisions/supplements.}
}

@misc{Besser2025RRT,
  title = {Review Response Template},
  author = {Besser, Karl-Ludwig},
  year = {2025},
  howpublished = {\url{https://www.overleaf.com/latex/templates/review-response-template/tmbvmjstxwrd}},
  note = {Modular per-reviewer sections for revisions.}
}

@misc{Shimada2025EWRAICWIPCT,
  title = {Experience with Reproducibility and Consistency in Writing an Introductory Programming Course Textbook},
  author = {Shimada, Takahiro and Others},
  year = {2025},
  doi = {10.1145/3736731.3746136},
  note = {Docker for LaTeX dependency resolution.}
}

@article{Zehr2023TFPOTCRBAB,
  title = {The Five Pillars of Computational Reproducibility: Bioinformatics and Beyond},
  author = {Zehr, Ashley M. and Others},
  journal = {Genome Biology},
  volume = {24},
  number = {1},
  pages = {1--15},
  year = {2023},
  doi = {10.1186/s13059-023-03087-0},
  note = {Literate programming for LaTeX reproducibility.}
}

@misc{Post2025SYLWWDVCSUG,
  title = {Streamline Your {LaTeX} Workflow with {Docker} and {VS Code}},
  author = {Post, Tim},
  year = {2025},
  howpublished = {\url{https://dev.to/tim012432/streamline-your-latex-workflow-with-docker-and-vs-code-the-ultimate-setup-guide-3mnc}},
  note = {Dockerized builds for CI/reproducibility.}
}