LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
scistree2/__init__.py
scistree2/metric.py
scistree2/node.py
scistree2/probability.py
scistree2/reader.py
scistree2/scistree.py
scistree2/tree.py
scistree2/treeutils.py
scistree2.egg-info/PKG-INFO
scistree2.egg-info/SOURCES.txt
scistree2.egg-info/dependency_links.txt
scistree2.egg-info/requires.txt
scistree2.egg-info/top_level.txt
src/BinaryMatrix.cpp
src/BinaryMatrix.h
src/BioSequenceMatrix.cpp
src/BioSequenceMatrix.h
src/GenotypeMatrix.cpp
src/GenotypeMatrix.h
src/Makefile
src/Makefile.win
src/MarginalTree.cpp
src/MarginalTree.h
src/PhylogenyTree.cpp
src/PhylogenyTree.h
src/PhylogenyTreeBasic.cpp
src/PhylogenyTreeBasic.h
src/RBT.cpp
src/RBT.h
src/README.md
src/RerootTreeUtils.cpp
src/RerootTreeUtils.h
src/ScisTree2-UserManual.pdf
src/ScistDoublet.cpp
src/ScistDoublet.hpp
src/ScistErrRateInf.cpp
src/ScistErrRateInf.hpp
src/ScistGenotype.cpp
src/ScistGenotype.hpp
src/ScistLocalSearch.cpp
src/ScistLocalSearch.hpp
src/ScistPerfPhyImp.cpp
src/ScistPerfPhyImp.hpp
src/ScistPerfPhyUtils.cpp
src/ScistPerfPhyUtils.hpp
src/TreeBuilder.cpp
src/TreeBuilder.h
src/UnWeightedGraph.cpp
src/UnWeightedGraph.h
src/Utils.cpp
src/Utils.h
src/Utils2.cpp
src/Utils2.h
src/Utils3.cpp
src/Utils3.h
src/Utils4.cpp
src/Utils4.h
src/UtilsNumerical.cpp
src/UtilsNumerical.h
src/example_input.txt
src/main.cpp
src/scistree