scirpy/__init__.py,sha256=Z6HBhav3fqBSSpeIl_PHeFym1BsAIlbCK7Dex1UmlVw,363
scirpy/_compat.py,sha256=RNcsihoj2wjqGZweT7Hw9cFG3aSpwRSVsU-xmXXgbEQ,289
scirpy/_metadata.py,sha256=1UrekhCSiJUzkaInnjgjnjaXgXGK-f4YjWNWibbsNng,1318
scirpy/datasets/__init__.py,sha256=77lb2Qmod7Vp0tuA5Subd8k5MrulttzR2ban-nhxPw0,12137
scirpy/datasets/_processing_scripts/.gitignore,sha256=3eoi4EK-3vOr8uc_G9YZ9TLoRI3gJjUY27BN8OI8-qA,20
scirpy/datasets/_processing_scripts/.jupytext,sha256=vd4d6tUOXnoLv1VpxY1xdyCuI3rnGae3M-78CL0YOJM,129
scirpy/datasets/_processing_scripts/3k_barcodes.csv,sha256=FCJM8D3Vj2azBt51iac7NHRYr60rEgLai_RlBZ7Yxhk,77249
scirpy/datasets/_processing_scripts/README.md,sha256=7Snd4vvvCVJEdDxuXC6rhNYXuA-xlMFYqW2Gn2jQusg,129
scirpy/datasets/_processing_scripts/maynard2020.py,sha256=ckHUlE8KBlja0F-nl_7o2iv-zoHH3ZZrjOihczy8Rr8,3248
scirpy/datasets/_processing_scripts/wu2020.py,sha256=GTsfn-TrDe5J7aQdwQTsiJmbq9aek1KPj0As98iwf7A,2716
scirpy/datasets/_processing_scripts/wu2020_3k.py,sha256=G0vghiQ0eNCFM7sMsAmHwVSTkHiWPm7jmuZFkhBAdXg,304
scirpy/io/__init__.py,sha256=mfNN5JmRFjdVnq-M_dTmIKEid9XZk7wdwq1pP1ZY8jk,1555
scirpy/io/_convert_anndata.py,sha256=v_UQGAZTaJKPMCIAZ3uE6ByV9WMIWxxte9tNWmAWWy8,4932
scirpy/io/_datastructures.py,sha256=VTbgIW7unBxebfTvYbz3_YZ1xYNE0htxJY_EazQ-hk8,14476
scirpy/io/_io.py,sha256=0li08w4v5YdfSdD77XA2gE6dcQJrwpmhBliThMRSaJs,31004
scirpy/io/_util.py,sha256=JfwMiTQkLeo2OOPapZKQlNwBJGqcu0xlzf7F0rj0Rgs,3680
scirpy/io/_tracerlib/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
scirpy/io/_tracerlib/core.py,sha256=_yCHlGPEfTMWcuYwOD0E7Qfq1lQrf4d_4FsTQOQscLY,18007
scirpy/ir_dist/__init__.py,sha256=pK_DONGxw3Se1d7xt3juFV9_WAw4MMjA8HDrIDjjI28,10949
scirpy/ir_dist/_clonotype_neighbors.py,sha256=OFCiBUgkaHPrCiECU1M2UPj1WUSrH6B4b5GBxaLdxtg,15240
scirpy/ir_dist/_util.py,sha256=Y1bYYmIjWZKdJ0MPoLuASPr0oIZfmWFvX7CKg09iKOU,15603
scirpy/ir_dist/metrics.py,sha256=FRE81jkoRFEQYwQ6b7kySj6U4Iaxx14LFxlCRCFOyGs,17482
scirpy/pl/__init__.py,sha256=rZU6_I1v8SMAIRBFNRYWeQ6ubLpbk_EPAbM4MQ6_Bt0,547
scirpy/pl/_cdr_convergence.py,sha256=y1VV0Zk55luWEtllyDlwYePVfGCOssvgIHmIGPfoR9k,4417
scirpy/pl/_clonal_expansion.py,sha256=Oiz4zsz7MJbeGK6KNKZH3eOcgM1JlDmUeAZD-S8AyQg,2577
scirpy/pl/_clonotype_imbalance.py,sha256=TxC1upTOC0S_G3TJYEXewiLZT7_ELrAWVAlqoTeShMg,5872
scirpy/pl/_clonotype_modularity.py,sha256=7PZJTOsncpg5vm3mgVi_0AXIBAB0Epn2I3ehwA-_b2M,6717
scirpy/pl/_clonotypes.py,sha256=ZQep2BeRxZDIz3YUlBBCGP4BzQ6i02ePxSnGImxY05I,19341
scirpy/pl/_diversity.py,sha256=M5sN47kgEtjT-XrQFchtrbmFeaRPr-lDw4PTnbrG5DY,2191
scirpy/pl/_group_abundance.py,sha256=07e7Djyli8WJMyyFlmINtikeWkROWHCSeXvKXtZ10wY,3404
scirpy/pl/_repertoire_overlap.py,sha256=TZ37z9x6OtU6M9gPDpMBL3j2Y_DPD5BrpjUuuLlsHU8,7543
scirpy/pl/_spectratype.py,sha256=2UPofGAAubLyk4l0JM8knHcbjZk8375BwaahAMYw4ic,3137
scirpy/pl/_vdj_usage.py,sha256=lfm4WST-OGLofWUsTMxjdXLUOJj1Fx7Tae8AU6aUH48,11507
scirpy/pl/base.py,sha256=qD30nBZw9YuYPCERsDdGu8TG0cwE3prsB_tLmhyW63Y,14706
scirpy/pl/styling.py,sha256=gW67M5dbrglZ_UXwyIjQ0RtCUc3-5FypNFpXZxhrOJ8,4638
scirpy/pp/__init__.py,sha256=nOzLyqlwkpmTY_hGRiIr9v-EphihTwFIgkHNEbvYeEs,1060
scirpy/pp/_merge_adata.py,sha256=bEllcBEONl7XY3mkbyLSyQB09rE6kCbZQXduLDEBno8,6305
scirpy/tests/__init__.py,sha256=eAZhaYbs877nrcW2gYoysQO9dH7XqRdmOwHYTG9QWGo,68
scirpy/tests/fixtures.py,sha256=1X7kwM-734Da-1hC2oOkFTcOw-yhLa01K22l81ITRt0,21321
scirpy/tests/test_clonotypes.py,sha256=xwtJGZTQOQc60N4rYVV4QfC-Kb8eQpyhDedMTwe1yw4,10188
scirpy/tests/test_datasets.py,sha256=yl8DsASJ0iN8W6pW6gjfcSRf4yPo6zv6aT6WRwRYAew,188
scirpy/tests/test_io.py,sha256=ztZQNY7UiXsZEj8RLZNDEJSPbmnZwePO08GR7bWpw-k,34845
scirpy/tests/test_ir_dist.py,sha256=Pi3wvlOP5V5JBdJcTYFw9qK89vaiA6JNgV5thVYhn2E,19682
scirpy/tests/test_ir_dist_metrics.py,sha256=jr47yoS569F3sN7AGGB1LGgb_HYA-FP8SylOEVjtU7w,8822
scirpy/tests/test_ir_dist_util.py,sha256=XIlXpK35bkrYhTyYBfM27gjx2O_bcXVY-pVgJ1w2Y3Y,12498
scirpy/tests/test_ir_query.py,sha256=uVTH6uhKYP_tR5tmKQ1976BxwQHHAie4IZK-RV84W5E,6417
scirpy/tests/test_plotting.py,sha256=lUqS2jnBZCiuVxs0EDZ0hCApkgJzDcvLvY5_41jjSuU,4113
scirpy/tests/test_plotting_base.py,sha256=7V-jwmTD_KXlOUqPwap0pFsXGzLml1i7RETE4MM1ICw,2153
scirpy/tests/test_preprocessing.py,sha256=nDVBOKhL3y6YMvv3bP9_DOml2XgLf71WbDmxfQ8K6v8,4351
scirpy/tests/test_tools.py,sha256=0VJ0WxoGaZP--iYDIA52AAfKufJMkSt-2lOMtfxxRTg,25976
scirpy/tests/test_util.py,sha256=s58ktsNzzlh7jVledgAjtOndlZRUMKbOArE-ZVAf85U,9699
scirpy/tests/test_util_graph.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
scirpy/tests/test_workflow.py,sha256=2khSCjTyWO-UFViTQKvqwmWijWG24qD6jT1cpo4muaY,2574
scirpy/tests/util.py,sha256=SDPrNvp5Qh0gFl-zD55gbkbG3p1_9zmoTOlQJBcZhYQ,983
scirpy/tests/data/wu2020_200_old_schema.h5ad,sha256=Q7C6uwVOE8YvZIvfvBpYuUH_q0luHZX85e0-sTidqDs,705118
scirpy/tests/data/10x/10k_BMMNC_5pv2_nextgem_Multiplex_vdj_t_all_contig_annotations_small.csv,sha256=Gelx3I2Fe7z1_BY8MCt6HCL5fLKxliCwSKX8fl9SJVQ,2477
scirpy/tests/data/10x/10k_BMMNC_5pv2_nextgem_Multiplex_vdj_t_all_contig_annotations_small.json,sha256=RIakGWYpgx7bmJzK2NYcau2aiN38kW6HhLGFtjYDR-M,26515
scirpy/tests/data/10x/all_contig_annotations.json,sha256=8oFHnfe6GlYyWLkWyFuhr87yuHxnGnuV8YVilphQoro,35123
scirpy/tests/data/10x/filtered_contig_annotations.csv,sha256=Oq79rqzUCQD78ftgbYe6kc-tHF7ytt4S92fC3wCeUg0,3818
scirpy/tests/data/10x/sc5p_v2_hs_melanoma_10k_b_filtered_contig_annotations.csv.gz,sha256=Acg3oM88YJzY83s0HxnneqyMe_r82uwkD608xerhQ14,541501
scirpy/tests/data/10x/vdj_nextgem_hs_pbmc3_t_filtered_contig_annotations.csv.gz,sha256=Gae_XjFf3IV16SrFxKSRwVGHhJKpuhno2__siG2IDpo,142732
scirpy/tests/data/airr/rearrangement_ig.tsv,sha256=WkiubfMCwlhb03Q-25pIaAUhPaBDkuEJyZ5Cpa5zP8I,9085
scirpy/tests/data/airr/rearrangement_tra.tsv,sha256=CWi8b0A5TMXiD92s0I6CEzYFCNtBzgtVRIWj3VvUfMA,9536
scirpy/tests/data/airr/rearrangement_trb.tsv,sha256=syTThA1Kj3kRuHwHawyitfjIIUy3-r91ZXv3B0N8XC4,8769
scirpy/tests/data/airr/tra_issue_280.tsv,sha256=q23yog6DcOHgGmUhE3K6jEAqluYdH43FEmJN_svZjoo,8010
scirpy/tests/data/bd/RhapVDJDemo_BCR_Dominant_Contigs.csv.gz,sha256=-bAQB53LsGPOf0tQk9mFZXkQ_LrhS_AX06ceDINHvb4,435028
scirpy/tests/data/bd/RhapVDJDemo_BCR_Unfiltered_Contigs.csv.gz,sha256=-XjOgpeAPZm3vK6m9dnN9zh691Q261816DLGllh-Q_s,401151
scirpy/tests/data/bd/test_per_cell_chain.csv,sha256=wtHJNmFf2J3LXPL4Q6jBPBLcbnmJodnxmT6gVHCF908,1213
scirpy/tests/data/bd/test_unfiltered_contigs.csv,sha256=fwYHNHVrUxTmJ7S6YOHc4dd8aMQiUCGB9Yv4BdrA350,7714
scirpy/tests/data/bracer/changeodb.tab,sha256=wG-c7o9G_Xk3awmO_y8nZIDx84Ijp7HiYZWPy0dkyfQ,11982
scirpy/tests/data/test_workflow/adata_10x_pbmc3_t.obs.expected.pkl.gz,sha256=cgGHS9Kh-LDQZSD5h1xMfSEysh5TN8ooNelqIEBPzW8,154500
scirpy/tests/data/test_workflow/adata_wu_200_old_schema.obs.expected.pkl.gz,sha256=qgxopycvF5K17Iv72_JYwWkrStJnzpSjV7ZHaEcjD_M,15031
scirpy/tests/data/tracer/SRR10782570/filtered_TCR_seqs/SRR10782570.pkl,sha256=V92L4kITgQhcgCCPpl3eoT7zFwXbct63HAExMftu6nE,11721
scirpy/tests/data/tracer/cell1/filtered_TCR_seqs/cell1.pkl,sha256=fNukd_2Hw_4-cuOmWDNyK_dpgiO0L-PfPwJJLkTJBHM,11403
scirpy/tests/data/tracer/cell2/filtered_TCR_seqs/cell2.pkl,sha256=qRgRvCsZbPrqZFibxlBFJ7Tza-_T3AMbFiSE7qOE2TU,17312
scirpy/tl/__init__.py,sha256=Kf43Mu-TMv4Z9zw739I6jAFQAMXw-C1Q5x6MXAQNJGw,666
scirpy/tl/_chain_qc.py,sha256=kT5ULiAmp-1XeoWwohs688GFfUIzQZ11tB1k1xHkFk8,8299
scirpy/tl/_clonal_expansion.py,sha256=UmABQRcCscbPJ8rFwQzyPwvp9FECILHR9dZ1YjnAOI0,5109
scirpy/tl/_clonotype_imbalance.py,sha256=bMdrVdErqMQnMOMDRlkM9i8KgsuSACmNf7kxemFyMOo,11439
scirpy/tl/_clonotype_modularity.py,sha256=Z0Jdt7pQyz3vD1sgfon3UM3qmP6v_ore_-D9cWjggf4,14027
scirpy/tl/_clonotypes.py,sha256=3C2zFcD_vAP25Fl3npQHxMwFQVIxLKwg4MfEhog7hrA,24231
scirpy/tl/_convergence.py,sha256=rQQFCuhuodpa3--BYACIceQykyQ4T5Q_VNd0K94Hsx0,2520
scirpy/tl/_diversity.py,sha256=ndSg-qI-pkFLS3dH2bzj3Q8sEHwS6M5TTrSj2sJxzlY,6185
scirpy/tl/_group_abundance.py,sha256=wFZ6cwzWwaQH_PZ7_5UKEjdyAhc_hIUJU3-RraqWM7c,3751
scirpy/tl/_ir_query.py,sha256=-zs7VeJO2c9HpeZslqblaYerJ1ivJrrOkE2Z_18s-Ts,14275
scirpy/tl/_repertoire_overlap.py,sha256=MuuzLiZlVT9XSlEKS7bOSpabgz16Bcw38Axjlo4Vva4,3295
scirpy/tl/_spectratype.py,sha256=TESRiCdpLNZvw1FzYoAq7sPIyMa9Ci0p_ibhAGdwdxw,2167
scirpy/util/__init__.py,sha256=vGteSg-MonvuwOvURQc-ZQv2_pfyvy5KFnY791vMSrE,6225
scirpy/util/_negative_binomial.py,sha256=u7PAEgMzVuOmVEfcKkc3XAV-kze3N8Kk3PtMOIPBpIw,2404
scirpy/util/graph/__init__.py,sha256=NygtlYSrJhEnuqzhmSzNk1SsZD7jro1chWvc_3QnbX8,5179
scirpy/util/graph/_component_layout.py,sha256=dcwem7OCuQ3sYwoiJqGcQbAXuVY5VsyeX-tjAHZNKmE,7158
scirpy/util/graph/_fr_size_aware_layout.py,sha256=7-3rqCPrJVXuTXajF03RqmTGD-G7itKFUXAECEFGxQI,13369
scirpy-0.12.2.dist-info/LICENSE,sha256=4OYZQjVLZ9slFA1l_w2aOUi6llKny1ADcWOOda7nJOw,1669
scirpy-0.12.2.dist-info/WHEEL,sha256=rSgq_JpHF9fHR1lx53qwg_1-2LypZE_qmcuXbVUq948,81
scirpy-0.12.2.dist-info/METADATA,sha256=5m8_OYJ1zUlbb7iTREjJzbzQgZR66-3h6poWfOOc6bM,6595
scirpy-0.12.2.dist-info/RECORD,,
