Metadata-Version: 2.1
Name: scipr
Version: 0.2.1
Summary: Single Cell Iterative Point set Registration (SCIPR)
Home-page: https://github.com/amiralavi/scipr
Author: Amir Alavi
Author-email: amiralavi@cmu.edu
License: BSD license
Keywords: scipr
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.6
Requires-Dist: scikit-learn
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: torch (>=1.2)
Provides-Extra: tensorboard
Requires-Dist: tensorboard (>=1.14) ; extra == 'tensorboard'
Provides-Extra: test
Requires-Dist: anndata ; extra == 'test'

=====
scipr
=====

.. image:: https://img.shields.io/pypi/v/scipr.svg
        :target: https://pypi.python.org/pypi/scipr

.. image:: https://img.shields.io/travis/amiralavi/scipr.svg
        :target: https://travis-ci.org/amiralavi/scipr

.. image:: https://readthedocs.org/projects/scipr/badge/?version=latest
        :target: https://scipr.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status

Single Cell Iterative Point set Registration (SCIPR)


* Free software: BSD license
* Homepage & Documentation: https://scipr.readthedocs.io.

Credits
-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage


=======
History
=======

0.1.0 (2020-05-13)
------------------

* First release on PyPI.

0.2.0 (2020-05-22)
------------------

* New logging capabilities
    - scipr API calls will no longer result in any output to stdout under normal conditions
    - Instead, now using Python's built-in `logging` module to emit logging information
    - Can also track SCIPR model fitting metrics per iteration in TensorBoard (optional)
* Now compatible with AnnData objects for fitting and transforming

0.2.1 (2020-05-26)
------------------

* Fix for bug that would cause MNN to break if `k=1`
* Fix for mistake in SCIPR.transform_adata documentation about Returns
* More tests for matching algorithms added


