Metadata-Version: 2.1
Name: scipion-em
Version: 3.10.2
Summary: Plugin extends Scipion framework towards cryo EM image processing
Author-email: Pablo Conesa <pconesa@cnb.csic.es>, Yunior Fonseca <cfonseca@cnb.csic.es>, "J.M. De la Rosa Trevin" <josemiguel.delarosatrevin@stjude.org>, Roberto Marabini <roberto@cnb.csic.es>, Grigory Sharov <sharov.grigory@gmail.com>, Josue Gomez Blanco <josue.gomez-blanco@mcgill.ca>
License: GNU General Public License v3 (GPLv3)
Project-URL: Homepage, https://github.com/scipion-em/scipion-em
Project-URL: Repository, https://github.com/scipion-em/scipion-em
Project-URL: Issues, https://github.com/scipion-em/scipion-em/issues
Keywords: scipion,electron-microscopy,cryo-em,structural-biology,image-processing,scipion-3.0
Requires-Python: >=3.8
Description-Content-Type: text/x-rst
License-File: LICENSE
Requires-Dist: scipion-pyworkflow>=3.11.2
Requires-Dist: biopython==1.81; python_version >= "3.8"
Requires-Dist: tifffile==2023.7.10; python_version == "3.8"
Requires-Dist: tifffile==2023.9.26; python_version >= "3.9"
Requires-Dist: emtable>=0.0.14
Requires-Dist: mrcfile<=1.4.3
Requires-Dist: scipy<=1.10.0; python_version < "3.12"
Requires-Dist: scipy==1.11.2; python_version == "3.12"
Requires-Dist: scikit-image==0.19.3; python_version < "3.10"
Requires-Dist: scikit-image; python_version >= "3.10"
Requires-Dist: metadata-viewer>=2.5

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        :alt: License

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        :alt: Supported Python versions

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        :alt: Downloads

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pwem
====

**pwem** is a Python module of Scipion framework for image processing in Electron Microscopy

The entire collection is licensed under the terms of the GNU Public License,
version 3 (GPLv3).

Development
-----------

To install **pwem** for development purposes, one can do:

.. code-block:: bash

    # Create a clean virtual environment
    conda create -n scipion python=3.8
    conda activate
    git clone https://github.com/scipion-em/scipion-em.git
    cd scipion-em
    pip install -e .

Running tests
-------------

.. code-block:: bash

    conda activate scipion
    cd scipion-em
    export SCIPION_DOMAIN="pwem"
    python -m unittest discover

API documentation
-----------------

https://scipion-em.github.io/docs/release-3.0.0/api/pwem/pwem.html
