Metadata-Version: 1.2
Name: scipion-em-continuousflex
Version: 3.0.9
Summary: Plugin to use continuousflex protocols within the Scipion framework
Home-page: https://github.com/scipion-em/scipion-em-continuousflex
Author: Slavica Jonic & Mohamad Harastani
Author-email: slavica.jonic@upmc.fr
License: UNKNOWN
Project-URL: Bug Reports, https://github.com/scipion-em/scipion-em-continuousflex/issues
Project-URL: Source, https://github.com/scipion-em/scipion-em-continuousflex/
Description: =====================
        ContinuousFlex plugin
        =====================
        
        This plugin provides the latest Scipion protocols for cryo-EM continuous conformational flexibility/heterogeneity analysis of biomolecular complexes.
        
        
        Installation
        ------------
        
        You will need to use `3.0 <https://github.com/I2PC/scipion/releases>`_ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
        
        a) Stable version
        
        	Install Scipion3 and use the plugin manager to install the plugin.
        
        b) Developer's version
        
           * download repository
        
           .. code-block::
        
              git clone https://github.com/scipion-em/scipion-em-continuousflex.git
              git checkout devel
        
           * install
        
           .. code-block::
        
              scipion3 installp -p path_to_scipion-em-continuousflex --devel
        
        continuousflex sources will be downloaded automatically with the plugin.
        
        
        Note: Xmipp and Chimerax plugins should be installed (from Scipion3 plugin manager) to run continuousflex protocols. You should also consider having VMD on your system for visualization.
        
        Supported versions
        ------------------
        
        3.0.1
        
        Protocols
        ---------
        
        * HEMNMA: Hybrid Electron-Microscopy Normal-Mode-Analysis
        * StructMap: Structural Mapping
        
        References
        ----------
        1. Harastani M, Sorzano CO, Jonić S. Hybrid Electron Microscopy Normal Mode Analysis with Scipion. Protein Science. 2020 Jan;29(1):223-36.
        2. Jin Q, Sorzano CO, de la Rosa-Trevin JM, Bilbao-Castro JR, Nunez-Ramirez R, Llorca O, Tama F,Jonic S: Iterative elastic 3D-to-2D alignment method using normal modes for studying structural dynamics of large macromolecular complexes. Structure 2014, 22:496-506.
        3. Sorzano CO, de la Rosa-Trevin JM, Tama F, Jonic S: Hybrid Electron Microscopy Normal Mode Analysis graphical interface and protocol. J Struct Biol 2014, 188:134-141.
        4. Sanchez Sorzano CO, Alvarez-Cabrera AL, Kazemi M, Carazo JM, Jonic S: StructMap: Elastic Distance Analysis of Electron Microscopy Maps for Studying Conformational Changes. Biophys J 2016, 110:1753-1765.
        
        
        
        # scipion-em-continuousflex
        
Keywords: scipion NMA HEMNMA StuctMap electron-microscopy cryo-em structural-biology image-processing scipion-3.0
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
