[console_scripts]
scil_NODDI_maps = scilpy.cli.scil_NODDI_maps:main
scil_NODDI_priors = scilpy.cli.scil_NODDI_priors:main
scil_aodf_metrics = scilpy.cli.scil_aodf_metrics:main
scil_bids_validate = scilpy.cli.scil_bids_validate:main
scil_bingham_metrics = scilpy.cli.scil_bingham_metrics:main
scil_btensor_metrics = scilpy.cli.scil_btensor_metrics:main
scil_bundle_alter_to_target_dice = scilpy.cli.scil_bundle_alter_to_target_dice:main
scil_bundle_clean_qbx_clusters = scilpy.cli.scil_bundle_clean_qbx_clusters:main
scil_bundle_compute_centroid = scilpy.cli.scil_bundle_compute_centroid:main
scil_bundle_compute_endpoints_map = scilpy.cli.scil_bundle_compute_endpoints_map:main
scil_bundle_diameter = scilpy.cli.scil_bundle_diameter:main
scil_bundle_explore_bundleseg = scilpy.cli.scil_bundle_explore_bundleseg:main
scil_bundle_filter_by_occurence = scilpy.cli.scil_bundle_filter_by_occurence:main
scil_bundle_fixel_analysis = scilpy.cli.scil_bundle_fixel_analysis:main
scil_bundle_generate_priors = scilpy.cli.scil_bundle_generate_priors:main
scil_bundle_label_map = scilpy.cli.scil_bundle_label_map:main
scil_bundle_mean_fixel_afd = scilpy.cli.scil_bundle_mean_fixel_afd:main
scil_bundle_mean_fixel_afd_from_hdf5 = scilpy.cli.scil_bundle_mean_fixel_afd_from_hdf5:main
scil_bundle_mean_fixel_bingham_metric = scilpy.cli.scil_bundle_mean_fixel_bingham_metric:main
scil_bundle_mean_fixel_mrds_metric = scilpy.cli.scil_bundle_mean_fixel_mrds_metric:main
scil_bundle_mean_std = scilpy.cli.scil_bundle_mean_std:main
scil_bundle_pairwise_comparison = scilpy.cli.scil_bundle_pairwise_comparison:main
scil_bundle_reject_outliers = scilpy.cli.scil_bundle_reject_outliers:main
scil_bundle_score_many_bundles_one_tractogram = scilpy.cli.scil_bundle_score_many_bundles_one_tractogram:main
scil_bundle_score_same_bundle_many_segmentations = scilpy.cli.scil_bundle_score_same_bundle_many_segmentations:main
scil_bundle_shape_measures = scilpy.cli.scil_bundle_shape_measures:main
scil_bundle_uniformize_endpoints = scilpy.cli.scil_bundle_uniformize_endpoints:main
scil_bundle_volume_per_label = scilpy.cli.scil_bundle_volume_per_label:main
scil_connectivity_compare_populations = scilpy.cli.scil_connectivity_compare_populations:main
scil_connectivity_compute_matrices = scilpy.cli.scil_connectivity_compute_matrices:main
scil_connectivity_compute_pca = scilpy.cli.scil_connectivity_compute_pca:main
scil_connectivity_compute_simple_matrix = scilpy.cli.scil_connectivity_compute_simple_matrix:main
scil_connectivity_filter = scilpy.cli.scil_connectivity_filter:main
scil_connectivity_graph_measures = scilpy.cli.scil_connectivity_graph_measures:main
scil_connectivity_hdf5_average_density_map = scilpy.cli.scil_connectivity_hdf5_average_density_map:main
scil_connectivity_math = scilpy.cli.scil_connectivity_math:main
scil_connectivity_normalize = scilpy.cli.scil_connectivity_normalize:main
scil_connectivity_pairwise_agreement = scilpy.cli.scil_connectivity_pairwise_agreement:main
scil_connectivity_print_filenames = scilpy.cli.scil_connectivity_print_filenames:main
scil_connectivity_reorder_rois = scilpy.cli.scil_connectivity_reorder_rois:main
scil_data_download = scilpy.cli.scil_data_download:main
scil_denoising_nlmeans = scilpy.cli.scil_denoising_nlmeans:main
scil_dki_metrics = scilpy.cli.scil_dki_metrics:main
scil_dti_convert_tensors = scilpy.cli.scil_dti_convert_tensors:main
scil_dti_metrics = scilpy.cli.scil_dti_metrics:main
scil_dwi_apply_bias_field = scilpy.cli.scil_dwi_apply_bias_field:main
scil_dwi_compute_snr = scilpy.cli.scil_dwi_compute_snr:main
scil_dwi_concatenate = scilpy.cli.scil_dwi_concatenate:main
scil_dwi_convert_FDF = scilpy.cli.scil_dwi_convert_FDF:main
scil_dwi_detect_volume_outliers = scilpy.cli.scil_dwi_detect_volume_outliers:main
scil_dwi_extract_b0 = scilpy.cli.scil_dwi_extract_b0:main
scil_dwi_extract_shell = scilpy.cli.scil_dwi_extract_shell:main
scil_dwi_powder_average = scilpy.cli.scil_dwi_powder_average:main
scil_dwi_prepare_eddy_command = scilpy.cli.scil_dwi_prepare_eddy_command:main
scil_dwi_prepare_topup_command = scilpy.cli.scil_dwi_prepare_topup_command:main
scil_dwi_reorder_philips = scilpy.cli.scil_dwi_reorder_philips:main
scil_dwi_split_by_indices = scilpy.cli.scil_dwi_split_by_indices:main
scil_dwi_to_sh = scilpy.cli.scil_dwi_to_sh:main
scil_fibertube_compute_density = scilpy.cli.scil_fibertube_compute_density:main
scil_fibertube_score_tractogram = scilpy.cli.scil_fibertube_score_tractogram:main
scil_fibertube_tracking = scilpy.cli.scil_fibertube_tracking:main
scil_fodf_bundleparc = scilpy.cli.scil_fodf_bundleparc:main
scil_fodf_max_in_ventricles = scilpy.cli.scil_fodf_max_in_ventricles:main
scil_fodf_memsmt = scilpy.cli.scil_fodf_memsmt:main
scil_fodf_metrics = scilpy.cli.scil_fodf_metrics:main
scil_fodf_msmt = scilpy.cli.scil_fodf_msmt:main
scil_fodf_ssst = scilpy.cli.scil_fodf_ssst:main
scil_fodf_to_bingham = scilpy.cli.scil_fodf_to_bingham:main
scil_freewater_maps = scilpy.cli.scil_freewater_maps:main
scil_freewater_priors = scilpy.cli.scil_freewater_priors:main
scil_frf_mean = scilpy.cli.scil_frf_mean:main
scil_frf_memsmt = scilpy.cli.scil_frf_memsmt:main
scil_frf_msmt = scilpy.cli.scil_frf_msmt:main
scil_frf_set_diffusivities = scilpy.cli.scil_frf_set_diffusivities:main
scil_frf_ssst = scilpy.cli.scil_frf_ssst:main
scil_get_version = scilpy.cli.scil_get_version:main
scil_gradients_apply_transform = scilpy.cli.scil_gradients_apply_transform:main
scil_gradients_convert = scilpy.cli.scil_gradients_convert:main
scil_gradients_generate_sampling = scilpy.cli.scil_gradients_generate_sampling:main
scil_gradients_modify_axes = scilpy.cli.scil_gradients_modify_axes:main
scil_gradients_normalize_bvecs = scilpy.cli.scil_gradients_normalize_bvecs:main
scil_gradients_round_bvals = scilpy.cli.scil_gradients_round_bvals:main
scil_gradients_validate_correct = scilpy.cli.scil_gradients_validate_correct:main
scil_gradients_validate_correct_eddy = scilpy.cli.scil_gradients_validate_correct_eddy:main
scil_gradients_validate_sampling = scilpy.cli.scil_gradients_validate_sampling:main
scil_header_print_info = scilpy.cli.scil_header_print_info:main
scil_header_validate_compatibility = scilpy.cli.scil_header_validate_compatibility:main
scil_json_convert_entries_to_xlsx = scilpy.cli.scil_json_convert_entries_to_xlsx:main
scil_json_harmonize_entries = scilpy.cli.scil_json_harmonize_entries:main
scil_json_merge_entries = scilpy.cli.scil_json_merge_entries:main
scil_labels_combine = scilpy.cli.scil_labels_combine:main
scil_labels_dilate = scilpy.cli.scil_labels_dilate:main
scil_labels_from_mask = scilpy.cli.scil_labels_from_mask:main
scil_labels_remove = scilpy.cli.scil_labels_remove:main
scil_labels_split_volume_by_ids = scilpy.cli.scil_labels_split_volume_by_ids:main
scil_labels_split_volume_from_lut = scilpy.cli.scil_labels_split_volume_from_lut:main
scil_lesions_generate_nawm = scilpy.cli.scil_lesions_generate_nawm:main
scil_lesions_harmonize_labels = scilpy.cli.scil_lesions_harmonize_labels:main
scil_lesions_info = scilpy.cli.scil_lesions_info:main
scil_mrds_metrics = scilpy.cli.scil_mrds_metrics:main
scil_mrds_select_number_of_tensors = scilpy.cli.scil_mrds_select_number_of_tensors:main
scil_mti_adjust_B1_header = scilpy.cli.scil_mti_adjust_B1_header:main
scil_mti_maps_MT = scilpy.cli.scil_mti_maps_MT:main
scil_mti_maps_ihMT = scilpy.cli.scil_mti_maps_ihMT:main
scil_plot_stats_per_point = scilpy.cli.scil_plot_stats_per_point:main
scil_qball_metrics = scilpy.cli.scil_qball_metrics:main
scil_rgb_convert = scilpy.cli.scil_rgb_convert:main
scil_search_keywords = scilpy.cli.scil_search_keywords:main
scil_sh_convert = scilpy.cli.scil_sh_convert:main
scil_sh_fusion = scilpy.cli.scil_sh_fusion:main
scil_sh_to_aodf = scilpy.cli.scil_sh_to_aodf:main
scil_sh_to_rish = scilpy.cli.scil_sh_to_rish:main
scil_sh_to_sf = scilpy.cli.scil_sh_to_sf:main
scil_stats_group_comparison = scilpy.cli.scil_stats_group_comparison:main
scil_surface_apply_transform = scilpy.cli.scil_surface_apply_transform:main
scil_surface_convert = scilpy.cli.scil_surface_convert:main
scil_surface_create = scilpy.cli.scil_surface_create:main
scil_surface_flip = scilpy.cli.scil_surface_flip:main
scil_surface_smooth = scilpy.cli.scil_surface_smooth:main
scil_tracking_local = scilpy.cli.scil_tracking_local:main
scil_tracking_local_dev = scilpy.cli.scil_tracking_local_dev:main
scil_tracking_pft = scilpy.cli.scil_tracking_pft:main
scil_tracking_pft_maps = scilpy.cli.scil_tracking_pft_maps:main
scil_tracking_pft_maps_edit = scilpy.cli.scil_tracking_pft_maps_edit:main
scil_tractogram_apply_transform = scilpy.cli.scil_tractogram_apply_transform:main
scil_tractogram_apply_transform_to_hdf5 = scilpy.cli.scil_tractogram_apply_transform_to_hdf5:main
scil_tractogram_assign_custom_color = scilpy.cli.scil_tractogram_assign_custom_color:main
scil_tractogram_assign_uniform_color = scilpy.cli.scil_tractogram_assign_uniform_color:main
scil_tractogram_commit = scilpy.cli.scil_tractogram_commit:main
scil_tractogram_compress = scilpy.cli.scil_tractogram_compress:main
scil_tractogram_compute_TODI = scilpy.cli.scil_tractogram_compute_TODI:main
scil_tractogram_compute_density_map = scilpy.cli.scil_tractogram_compute_density_map:main
scil_tractogram_convert = scilpy.cli.scil_tractogram_convert:main
scil_tractogram_convert_hdf5_to_trk = scilpy.cli.scil_tractogram_convert_hdf5_to_trk:main
scil_tractogram_convert_trk_to_hdf5 = scilpy.cli.scil_tractogram_convert_trk_to_hdf5:main
scil_tractogram_count_streamlines = scilpy.cli.scil_tractogram_count_streamlines:main
scil_tractogram_cut_streamlines = scilpy.cli.scil_tractogram_cut_streamlines:main
scil_tractogram_detect_loops = scilpy.cli.scil_tractogram_detect_loops:main
scil_tractogram_dpp_math = scilpy.cli.scil_tractogram_dpp_math:main
scil_tractogram_dps_math = scilpy.cli.scil_tractogram_dps_math:main
scil_tractogram_extract_ushape = scilpy.cli.scil_tractogram_extract_ushape:main
scil_tractogram_filter_by_anatomy = scilpy.cli.scil_tractogram_filter_by_anatomy:main
scil_tractogram_filter_by_length = scilpy.cli.scil_tractogram_filter_by_length:main
scil_tractogram_filter_by_orientation = scilpy.cli.scil_tractogram_filter_by_orientation:main
scil_tractogram_filter_by_roi = scilpy.cli.scil_tractogram_filter_by_roi:main
scil_tractogram_filter_collisions = scilpy.cli.scil_tractogram_filter_collisions:main
scil_tractogram_flip = scilpy.cli.scil_tractogram_flip:main
scil_tractogram_math = scilpy.cli.scil_tractogram_math:main
scil_tractogram_pairwise_comparison = scilpy.cli.scil_tractogram_pairwise_comparison:main
scil_tractogram_print_info = scilpy.cli.scil_tractogram_print_info:main
scil_tractogram_project_map_to_streamlines = scilpy.cli.scil_tractogram_project_map_to_streamlines:main
scil_tractogram_project_streamlines_to_map = scilpy.cli.scil_tractogram_project_streamlines_to_map:main
scil_tractogram_qbx = scilpy.cli.scil_tractogram_qbx:main
scil_tractogram_register = scilpy.cli.scil_tractogram_register:main
scil_tractogram_remove_invalid = scilpy.cli.scil_tractogram_remove_invalid:main
scil_tractogram_resample = scilpy.cli.scil_tractogram_resample:main
scil_tractogram_resample_nb_points = scilpy.cli.scil_tractogram_resample_nb_points:main
scil_tractogram_seed_density_map = scilpy.cli.scil_tractogram_seed_density_map:main
scil_tractogram_segment_connections_from_labels = scilpy.cli.scil_tractogram_segment_connections_from_labels:main
scil_tractogram_segment_with_ROI_and_score = scilpy.cli.scil_tractogram_segment_with_ROI_and_score:main
scil_tractogram_segment_with_bundleseg = scilpy.cli.scil_tractogram_segment_with_bundleseg:main
scil_tractogram_segment_with_recobundles = scilpy.cli.scil_tractogram_segment_with_recobundles:main
scil_tractogram_shuffle = scilpy.cli.scil_tractogram_shuffle:main
scil_tractogram_smooth = scilpy.cli.scil_tractogram_smooth:main
scil_tractogram_split = scilpy.cli.scil_tractogram_split:main
scil_viz_bingham_fit = scilpy.cli.scil_viz_bingham_fit:main
scil_viz_bundle = scilpy.cli.scil_viz_bundle:main
scil_viz_bundle_screenshot_mni = scilpy.cli.scil_viz_bundle_screenshot_mni:main
scil_viz_bundle_screenshot_mosaic = scilpy.cli.scil_viz_bundle_screenshot_mosaic:main
scil_viz_connectivity = scilpy.cli.scil_viz_connectivity:main
scil_viz_dti_screenshot = scilpy.cli.scil_viz_dti_screenshot:main
scil_viz_fodf = scilpy.cli.scil_viz_fodf:main
scil_viz_gradients_screenshot = scilpy.cli.scil_viz_gradients_screenshot:main
scil_viz_tractogram_collisions = scilpy.cli.scil_viz_tractogram_collisions:main
scil_viz_tractogram_seeds = scilpy.cli.scil_viz_tractogram_seeds:main
scil_viz_tractogram_seeds_3d = scilpy.cli.scil_viz_tractogram_seeds_3d:main
scil_viz_volume_histogram = scilpy.cli.scil_viz_volume_histogram:main
scil_viz_volume_scatterplot = scilpy.cli.scil_viz_volume_scatterplot:main
scil_viz_volume_screenshot = scilpy.cli.scil_viz_volume_screenshot:main
scil_viz_volume_screenshot_mosaic = scilpy.cli.scil_viz_volume_screenshot_mosaic:main
scil_volume_apply_transform = scilpy.cli.scil_volume_apply_transform:main
scil_volume_b0_synthesis = scilpy.cli.scil_volume_b0_synthesis:main
scil_volume_count_non_zero_voxels = scilpy.cli.scil_volume_count_non_zero_voxels:main
scil_volume_crop = scilpy.cli.scil_volume_crop:main
scil_volume_distance_map = scilpy.cli.scil_volume_distance_map:main
scil_volume_flip = scilpy.cli.scil_volume_flip:main
scil_volume_math = scilpy.cli.scil_volume_math:main
scil_volume_pairwise_comparison = scilpy.cli.scil_volume_pairwise_comparison:main
scil_volume_remove_outliers_ransac = scilpy.cli.scil_volume_remove_outliers_ransac:main
scil_volume_resample = scilpy.cli.scil_volume_resample:main
scil_volume_reshape = scilpy.cli.scil_volume_reshape:main
scil_volume_reslice_to_reference = scilpy.cli.scil_volume_reslice_to_reference:main
scil_volume_stats_in_ROI = scilpy.cli.scil_volume_stats_in_ROI:main
scil_volume_stats_in_labels = scilpy.cli.scil_volume_stats_in_labels:main
