[console_scripts]
__init__.py = scripts.__init__:main
scil_add_tracking_mask_to_pft_maps.py = scripts.scil_add_tracking_mask_to_pft_maps:main
scil_analyse_lesions_load.py = scripts.scil_analyse_lesions_load:main
scil_apply_bias_field_on_dwi.py = scripts.scil_apply_bias_field_on_dwi:main
scil_apply_transform_to_bvecs.py = scripts.scil_apply_transform_to_bvecs:main
scil_apply_transform_to_hdf5.py = scripts.scil_apply_transform_to_hdf5:main
scil_apply_transform_to_image.py = scripts.scil_apply_transform_to_image:main
scil_apply_transform_to_surface.py = scripts.scil_apply_transform_to_surface:main
scil_apply_transform_to_tractogram.py = scripts.scil_apply_transform_to_tractogram:main
scil_assign_custom_color_to_tractogram.py = scripts.scil_assign_custom_color_to_tractogram:main
scil_assign_uniform_color_to_tractograms.py = scripts.scil_assign_uniform_color_to_tractograms:main
scil_clean_qbx_clusters.py = scripts.scil_clean_qbx_clusters:main
scil_combine_labels.py = scripts.scil_combine_labels:main
scil_compare_connectivity.py = scripts.scil_compare_connectivity:main
scil_compress_streamlines.py = scripts.scil_compress_streamlines:main
scil_compute_MT_maps.py = scripts.scil_compute_MT_maps:main
scil_compute_NODDI.py = scripts.scil_compute_NODDI:main
scil_compute_NODDI_priors.py = scripts.scil_compute_NODDI_priors:main
scil_compute_asym_odf_metrics.py = scripts.scil_compute_asym_odf_metrics:main
scil_compute_bundle_mean_std.py = scripts.scil_compute_bundle_mean_std:main
scil_compute_bundle_mean_std_per_point.py = scripts.scil_compute_bundle_mean_std_per_point:main
scil_compute_bundle_volume.py = scripts.scil_compute_bundle_volume:main
scil_compute_bundle_volume_per_label.py = scripts.scil_compute_bundle_volume_per_label:main
scil_compute_bundle_voxel_label_map.py = scripts.scil_compute_bundle_voxel_label_map:main
scil_compute_centroid.py = scripts.scil_compute_centroid:main
scil_compute_connectivity.py = scripts.scil_compute_connectivity:main
scil_compute_divide.py = scripts.scil_compute_divide:main
scil_compute_dti_metrics.py = scripts.scil_compute_dti_metrics:main
scil_compute_endpoints_map.py = scripts.scil_compute_endpoints_map:main
scil_compute_fodf_max_in_ventricles.py = scripts.scil_compute_fodf_max_in_ventricles:main
scil_compute_fodf_metrics.py = scripts.scil_compute_fodf_metrics:main
scil_compute_freewater.py = scripts.scil_compute_freewater:main
scil_compute_hdf5_average_density_map.py = scripts.scil_compute_hdf5_average_density_map:main
scil_compute_ihMT_maps.py = scripts.scil_compute_ihMT_maps:main
scil_compute_kurtosis_metrics.py = scripts.scil_compute_kurtosis_metrics:main
scil_compute_lobe_specific_fodf_metrics.py = scripts.scil_compute_lobe_specific_fodf_metrics:main
scil_compute_local_tracking.py = scripts.scil_compute_local_tracking:main
scil_compute_local_tracking_dev.py = scripts.scil_compute_local_tracking_dev:main
scil_compute_local_tracking_gpu.py = scripts.scil_compute_local_tracking_gpu:main
scil_compute_maps_for_particle_filter_tracking.py = scripts.scil_compute_maps_for_particle_filter_tracking:main
scil_compute_mean_fixel_afd_from_bundles.py = scripts.scil_compute_mean_fixel_afd_from_bundles:main
scil_compute_mean_fixel_afd_from_hdf5.py = scripts.scil_compute_mean_fixel_afd_from_hdf5:main
scil_compute_mean_fixel_lobe_metric_from_bundles.py = scripts.scil_compute_mean_fixel_lobe_metric_from_bundles:main
scil_compute_mean_frf.py = scripts.scil_compute_mean_frf:main
scil_compute_memsmt_fodf.py = scripts.scil_compute_memsmt_fodf:main
scil_compute_memsmt_frf.py = scripts.scil_compute_memsmt_frf:main
scil_compute_metrics_stats_in_ROI.py = scripts.scil_compute_metrics_stats_in_ROI:main
scil_compute_msmt_fodf.py = scripts.scil_compute_msmt_fodf:main
scil_compute_msmt_frf.py = scripts.scil_compute_msmt_frf:main
scil_compute_pca.py = scripts.scil_compute_pca:main
scil_compute_pft.py = scripts.scil_compute_pft:main
scil_compute_powder_average.py = scripts.scil_compute_powder_average:main
scil_compute_qball_metrics.py = scripts.scil_compute_qball_metrics:main
scil_compute_qbx.py = scripts.scil_compute_qbx:main
scil_compute_rish_from_sh.py = scripts.scil_compute_rish_from_sh:main
scil_compute_seed_by_labels.py = scripts.scil_compute_seed_by_labels:main
scil_compute_seed_density_map.py = scripts.scil_compute_seed_density_map:main
scil_compute_sf_from_sh.py = scripts.scil_compute_sf_from_sh:main
scil_compute_sh_from_signal.py = scripts.scil_compute_sh_from_signal:main
scil_compute_ssst_fodf.py = scripts.scil_compute_ssst_fodf:main
scil_compute_ssst_frf.py = scripts.scil_compute_ssst_frf:main
scil_compute_streamlines_density_map.py = scripts.scil_compute_streamlines_density_map:main
scil_compute_streamlines_length_stats.py = scripts.scil_compute_streamlines_length_stats:main
scil_compute_todi.py = scripts.scil_compute_todi:main
scil_concatenate_dwi.py = scripts.scil_concatenate_dwi:main
scil_connectivity_math.py = scripts.scil_connectivity_math:main
scil_convert_fdf.py = scripts.scil_convert_fdf:main
scil_convert_gradients_fsl_to_mrtrix.py = scripts.scil_convert_gradients_fsl_to_mrtrix:main
scil_convert_gradients_mrtrix_to_fsl.py = scripts.scil_convert_gradients_mrtrix_to_fsl:main
scil_convert_json_to_xlsx.py = scripts.scil_convert_json_to_xlsx:main
scil_convert_rgb.py = scripts.scil_convert_rgb:main
scil_convert_sh_basis.py = scripts.scil_convert_sh_basis:main
scil_convert_surface.py = scripts.scil_convert_surface:main
scil_convert_tensors.py = scripts.scil_convert_tensors:main
scil_convert_tractogram.py = scripts.scil_convert_tractogram:main
scil_count_non_zero_voxels.py = scripts.scil_count_non_zero_voxels:main
scil_count_streamlines.py = scripts.scil_count_streamlines:main
scil_crop_volume.py = scripts.scil_crop_volume:main
scil_cut_streamlines.py = scripts.scil_cut_streamlines:main
scil_decompose_connectivity.py = scripts.scil_decompose_connectivity:main
scil_detect_dwi_volume_outliers.py = scripts.scil_detect_dwi_volume_outliers:main
scil_detect_streamlines_loops.py = scripts.scil_detect_streamlines_loops:main
scil_dilate_labels.py = scripts.scil_dilate_labels:main
scil_estimate_bundles_diameter.py = scripts.scil_estimate_bundles_diameter:main
scil_evaluate_bundles_binary_classification_measures.py = scripts.scil_evaluate_bundles_binary_classification_measures:main
scil_evaluate_bundles_individual_measures.py = scripts.scil_evaluate_bundles_individual_measures:main
scil_evaluate_bundles_pairwise_agreement_measures.py = scripts.scil_evaluate_bundles_pairwise_agreement_measures:main
scil_evaluate_connectivity_graph_measures.py = scripts.scil_evaluate_connectivity_graph_measures:main
scil_evaluate_connectivity_pairwise_agreement_measures.py = scripts.scil_evaluate_connectivity_pairwise_agreement_measures:main
scil_execute_angle_aware_bilateral_filtering.py = scripts.scil_execute_angle_aware_bilateral_filtering:main
scil_execute_asymmetric_filtering.py = scripts.scil_execute_asymmetric_filtering:main
scil_extract_b0.py = scripts.scil_extract_b0:main
scil_extract_dwi_shell.py = scripts.scil_extract_dwi_shell:main
scil_extract_ushape.py = scripts.scil_extract_ushape:main
scil_filter_connectivity.py = scripts.scil_filter_connectivity:main
scil_filter_streamlines_by_length.py = scripts.scil_filter_streamlines_by_length:main
scil_filter_streamlines_by_orientation.py = scripts.scil_filter_streamlines_by_orientation:main
scil_filter_tractogram.py = scripts.scil_filter_tractogram:main
scil_filter_tractogram_anatomically.py = scripts.scil_filter_tractogram_anatomically:main
scil_fit_bingham_to_fodf.py = scripts.scil_fit_bingham_to_fodf:main
scil_fix_dsi_studio_trk.py = scripts.scil_fix_dsi_studio_trk:main
scil_flip_gradients.py = scripts.scil_flip_gradients:main
scil_flip_streamlines.py = scripts.scil_flip_streamlines:main
scil_flip_surface.py = scripts.scil_flip_surface:main
scil_flip_volume.py = scripts.scil_flip_volume:main
scil_generate_gradient_sampling.py = scripts.scil_generate_gradient_sampling:main
scil_generate_priors_from_bundle.py = scripts.scil_generate_priors_from_bundle:main
scil_group_comparison.py = scripts.scil_group_comparison:main
scil_image_math.py = scripts.scil_image_math:main
scil_merge_json.py = scripts.scil_merge_json:main
scil_merge_sh.py = scripts.scil_merge_sh:main
scil_normalize_connectivity.py = scripts.scil_normalize_connectivity:main
scil_outlier_rejection.py = scripts.scil_outlier_rejection:main
scil_perform_majority_vote.py = scripts.scil_perform_majority_vote:main
scil_plot_mean_std_per_point.py = scripts.scil_plot_mean_std_per_point:main
scil_prepare_eddy_command.py = scripts.scil_prepare_eddy_command:main
scil_prepare_topup_command.py = scripts.scil_prepare_topup_command:main
scil_print_connectivity_filenames.py = scripts.scil_print_connectivity_filenames:main
scil_print_header.py = scripts.scil_print_header:main
scil_project_streamlines_to_map.py = scripts.scil_project_streamlines_to_map:main
scil_recognize_multi_bundles.py = scripts.scil_recognize_multi_bundles:main
scil_recognize_single_bundle.py = scripts.scil_recognize_single_bundle:main
scil_register_tractogram.py = scripts.scil_register_tractogram:main
scil_remove_invalid_streamlines.py = scripts.scil_remove_invalid_streamlines:main
scil_remove_labels.py = scripts.scil_remove_labels:main
scil_remove_outliers_ransac.py = scripts.scil_remove_outliers_ransac:main
scil_remove_similar_streamlines.py = scripts.scil_remove_similar_streamlines:main
scil_reorder_connectivity.py = scripts.scil_reorder_connectivity:main
scil_reorder_dwi_philips.py = scripts.scil_reorder_dwi_philips:main
scil_resample_bvals.py = scripts.scil_resample_bvals:main
scil_resample_streamlines.py = scripts.scil_resample_streamlines:main
scil_resample_tractogram.py = scripts.scil_resample_tractogram:main
scil_resample_volume.py = scripts.scil_resample_volume:main
scil_reshape_to_reference.py = scripts.scil_reshape_to_reference:main
scil_run_commit.py = scripts.scil_run_commit:main
scil_run_nlmeans.py = scripts.scil_run_nlmeans:main
scil_save_connections_from_hdf5.py = scripts.scil_save_connections_from_hdf5:main
scil_score_bundles.py = scripts.scil_score_bundles:main
scil_score_tractogram.py = scripts.scil_score_tractogram:main
scil_screenshot_bundle.py = scripts.scil_screenshot_bundle:main
scil_screenshot_dti.py = scripts.scil_screenshot_dti:main
scil_screenshot_volume_mosaic_overlap.py = scripts.scil_screenshot_volume_mosaic_overlap:main
scil_search_keywords.py = scripts.scil_search_keywords:main
scil_set_response_function.py = scripts.scil_set_response_function:main
scil_shuffle_streamlines.py = scripts.scil_shuffle_streamlines:main
scil_smooth_streamlines.py = scripts.scil_smooth_streamlines:main
scil_smooth_surface.py = scripts.scil_smooth_surface:main
scil_snr_in_roi.py = scripts.scil_snr_in_roi:main
scil_split_image.py = scripts.scil_split_image:main
scil_split_tractogram.py = scripts.scil_split_tractogram:main
scil_split_volume_by_ids.py = scripts.scil_split_volume_by_ids:main
scil_split_volume_by_labels.py = scripts.scil_split_volume_by_labels:main
scil_streamlines_math.py = scripts.scil_streamlines_math:main
scil_swap_gradient_axis.py = scripts.scil_swap_gradient_axis:main
scil_tractogram_math.py = scripts.scil_tractogram_math:main
scil_uniformize_streamlines_endpoints.py = scripts.scil_uniformize_streamlines_endpoints:main
scil_validate_and_correct_bvecs.py = scripts.scil_validate_and_correct_bvecs:main
scil_validate_and_correct_eddy_gradients.py = scripts.scil_validate_and_correct_eddy_gradients:main
scil_validate_bids.py = scripts.scil_validate_bids:main
scil_verify_space_attributes_compatibility.py = scripts.scil_verify_space_attributes_compatibility:main
scil_visualize_bingham_fit.py = scripts.scil_visualize_bingham_fit:main
scil_visualize_bundles.py = scripts.scil_visualize_bundles:main
scil_visualize_bundles_mosaic.py = scripts.scil_visualize_bundles_mosaic:main
scil_visualize_connectivity.py = scripts.scil_visualize_connectivity:main
scil_visualize_fodf.py = scripts.scil_visualize_fodf:main
scil_visualize_gradients.py = scripts.scil_visualize_gradients:main
scil_visualize_histogram.py = scripts.scil_visualize_histogram:main
scil_visualize_scatterplot.py = scripts.scil_visualize_scatterplot:main
scil_visualize_seeds.py = scripts.scil_visualize_seeds:main
scil_visualize_seeds_3d.py = scripts.scil_visualize_seeds_3d:main
