MANIFEST.in
README.md
pyproject.toml
requirements.txt
examples/create_synthetic_data.py
examples/create_synthetic_data2.py
examples/dft_workflow.py
examples/generate_curve_test_cases.py
examples/novelty_assesment_microscopy.py
examples/novelty_assesment_spectroscopy.py
examples/run_curve_agent_test.py
examples/synthetic_data_gen.py
examples/test_hyperspectral_agent.py
examples/test_hyperspectral_agent2.py
examples/test_hyperspectral_agent3.py
examples/curve_run_output/custom_processing_fail/preprocessing/custom_preprocessing_script_1d.py
examples/curve_run_output/custom_processing_success/preprocessing/custom_preprocessing_script_1d.py
scilink/__init__.py
scilink/auth.py
scilink/executors.py
scilink.egg-info/PKG-INFO
scilink.egg-info/SOURCES.txt
scilink.egg-info/dependency_links.txt
scilink.egg-info/entry_points.txt
scilink.egg-info/requires.txt
scilink.egg-info/top_level.txt
scilink/__pycache__/__init__.cpython-311.pyc
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scilink/agents/__init__.py
scilink/agents/__pycache__/__init__.cpython-311.pyc
scilink/agents/exp_agents/__init__.py
scilink/agents/exp_agents/atomistic_microscopy_agent.py
scilink/agents/exp_agents/base_agent.py
scilink/agents/exp_agents/curve_fitting_agent.py
scilink/agents/exp_agents/holistic_microscopy_agent.py
scilink/agents/exp_agents/human_feedback.py
scilink/agents/exp_agents/hyperspectral_analysis_agent.py
scilink/agents/exp_agents/instruct.py
scilink/agents/exp_agents/metadata_converter.py
scilink/agents/exp_agents/microscopy_agent.py
scilink/agents/exp_agents/orchestrator_agent.py
scilink/agents/exp_agents/preprocess.py
scilink/agents/exp_agents/recommendation_agent.py
scilink/agents/exp_agents/sam_microscopy_agent.py
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scilink/agents/lit_agents/__init__.py
scilink/agents/lit_agents/instruct.py
scilink/agents/lit_agents/literature_agent.py
scilink/agents/lit_agents/novelty_scorer.py
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scilink/agents/planning_agents/__init__.py
scilink/agents/planning_agents/excel_parser.py
scilink/agents/planning_agents/instruct.py
scilink/agents/planning_agents/knowledge_base.py
scilink/agents/planning_agents/parser_utils.py
scilink/agents/planning_agents/pdf_parser.py
scilink/agents/planning_agents/planning_agent.py
scilink/agents/sim_agents/__init__.py
scilink/agents/sim_agents/atomate2_utils.py
scilink/agents/sim_agents/force_field_agent.py
scilink/agents/sim_agents/instruct.py
scilink/agents/sim_agents/lammps_agent.py
scilink/agents/sim_agents/lammps_updater.py
scilink/agents/sim_agents/lammps_utils.py
scilink/agents/sim_agents/llm_client.py
scilink/agents/sim_agents/packmol_agent.py
scilink/agents/sim_agents/structure_agent.py
scilink/agents/sim_agents/tools.py
scilink/agents/sim_agents/utils.py
scilink/agents/sim_agents/val_agent.py
scilink/agents/sim_agents/vasp_agent.py
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scilink/agents/sim_agents/docs/aimsgb.txt
scilink/cli/__init__.py
scilink/cli/agents.py
scilink/cli/run_agent.py
scilink/cli/workflows.py
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scilink/workflows/__init__.py
scilink/workflows/analyzers.py
scilink/workflows/dft_recommendation_workflow.py
scilink/workflows/dft_workflow.py
scilink/workflows/experiment2dft.py
scilink/workflows/experiment_novelty_workflow.py
scilink/workflows/hyperspectral_analysis_workflow.py
scilink/workflows/md_workflow.py
scilink/workflows/microscopy_analysis_workflow.py
scilink/workflows/multimodal_workflow.py
scilink/workflows/spectroscopy1d_analysis_workflow.py
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scilink/wrappers/__init__.py
scilink/wrappers/llama_wrapper.py
scilink/wrappers/openai_wrapper.py
scilink/wrappers/openai_wrapper_embeddings.py
scilink/wrappers/openai_wrapper_tools.py
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